eF-site ID 2qql-AHL PDB Code 2qql Chain A, H, L click to enlarge Title Neuropilin-2 a1a2b1b2 Domains in Complex with a Semaphorin-Blocking Fab Classification SIGNALING PROTEIN Compound Neuropilin-2 Source null (2QQL) Sequence A:  PPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPN QKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHC GNIAPPTIISSGSMLYIKFTSDYARQGAGFSLRYEIFKTG SEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKM EIILQFLIFDLCKYDWLDIWDGIPHVGPLIGKYCGTKTPS ELRSSTGILSLTFHTDMAVAKDGFSARYYLVHQEPLENFQ CNVPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDN GWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISRETQNGY YVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVVLN KLHAPLLTRFVRIRPQTWHSGIALRLELFGCRVTDAPCSN MLGMLSGLIADSQISASSTQEYLWSPSAARLVSSRSGWFP RIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGARAFVRKF KVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDTPDIRRFD PIPAQYVRVYPERWSPAGIGMRLEVLGCDWTHHH H:  EVQLVESGGGLVQPGGSLRLSCAASGFTISGYGIHWVRQA PGKGLEWVAYIYPDSGYTDYADSVKGRFTISADTSKNTAY LQMNSLRAEDTAVYYCAREDFRNRRRLWYVMDYWGQGTLV TVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSW NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTY ICNVNHKPSNTKVDKKVEPKSC L:  DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKP GKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQAWAYLPTFGQGTKVEIKRTVAAPSVFIFPP SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG LSSPVTKSFNRGEC Description Functional site 1) chain A residue 317-346 type prosite sequence GWTPNLDSNKEYLQVDLRFLTMLTAIATQG description FA58C_1 Coagulation factors 5/8 type C domain (FA58C) signature 1. GWtpnldsnke......YLqVDlrfltmLtaIaTQG source prosite : PS01285 2) chain A residue 473-505 type prosite sequence GWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQG description FA58C_1 Coagulation factors 5/8 type C domain (FA58C) signature 1. GWtpnldsnke......YLqVDlrfltmLtaIaTQG source prosite : PS01285 3) chain A residue 411-427 type prosite sequence PQTWHSGIALRLELFGC description FA58C_2 Coagulation factors 5/8 type C domain (FA58C) signature 2. Pqtwhsgia..LRlELfGC source prosite : PS01286 4) chain A residue 575-592 type prosite sequence PERWSPAGIGMRLEVLGC description FA58C_2 Coagulation factors 5/8 type C domain (FA58C) signature 2. Pqtwhsgia..LRlELfGC source prosite : PS01286 5) chain A residue 211 type BINDING sequence D description BINDING => ECO:0000269|PubMed:17989695, ECO:0007744|PDB:2QQO source Swiss-Prot : SWS_FT_FI1 6) chain A residue 252 type BINDING sequence D description BINDING => ECO:0000269|PubMed:17989695, ECO:0007744|PDB:2QQO source Swiss-Prot : SWS_FT_FI1 7) chain A residue 152 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:17989695, ECO:0007744|PDB:2QQK source Swiss-Prot : SWS_FT_FI2 8) chain A residue 157 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:17989695, ECO:0007744|PDB:2QQK source Swiss-Prot : SWS_FT_FI2 9) chain L residue 192-198 type prosite sequence YACEVTH description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACEVTH source prosite : PS00290 10) chain H residue 194-200 type prosite sequence YICNVNH description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACEVTH source prosite : PS00290

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