eF-site ID 2q3f-AB
PDB Code 2q3f
Chain A, B

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Title X-ray crystal structure of putative human Ras-related GTP binding D in complex with GMPPNP
Classification PROTEIN BINDING
Compound Ras-related GTP-binding protein D
Source Homo sapiens (Human) (RRAGD_HUMAN)
Sequence A:  VKPRILLXGLRRSGKSSIQKVVFHKXSPNETLFLESTNKI
CREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEXIFRGTGA
LIFVIDSQDDYXEALARLHLTVTRAYKVNTDINFEVFIHK
VDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTS
IYDHSIFEAFSKVVQKLIP
B:  VKPRILLXGLRRSGKSSIQKVVFHKXSPNETLFLESTNKI
CREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEXIFRGTGA
LIFVIDSQDDYXEALARLHLTVTRAYKVNTDINFEVFIHK
VDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTS
IYDHSIFEAFSKVVQKLI
Description (1)  Ras-related GTP-binding protein D


Functional site

1) chain A
residue 57
type
sequence S
description BINDING SITE FOR RESIDUE MG A 301
source : AC1

2) chain A
residue 78
type
sequence T
description BINDING SITE FOR RESIDUE MG A 301
source : AC1

3) chain B
residue 57
type
sequence S
description BINDING SITE FOR RESIDUE MG B 302
source : AC2

4) chain B
residue 78
type
sequence T
description BINDING SITE FOR RESIDUE MG B 302
source : AC2

5) chain A
residue 52
type
sequence R
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

6) chain A
residue 53
type
sequence R
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

7) chain A
residue 54
type
sequence S
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

8) chain A
residue 55
type
sequence G
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

9) chain A
residue 56
type
sequence K
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

10) chain A
residue 57
type
sequence S
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

11) chain A
residue 58
type
sequence S
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

12) chain A
residue 72
type
sequence T
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

13) chain A
residue 73
type
sequence L
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

14) chain A
residue 78
type
sequence T
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

15) chain A
residue 101
type
sequence G
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

16) chain A
residue 129
type
sequence Q
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

17) chain A
residue 160
type
sequence H
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

18) chain A
residue 161
type
sequence K
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

19) chain A
residue 163
type
sequence D
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

20) chain A
residue 201
type
sequence S
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

21) chain A
residue 202
type
sequence I
description BINDING SITE FOR RESIDUE GNP A 401
source : AC3

22) chain B
residue 51
type
sequence L
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

23) chain B
residue 52
type
sequence R
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

24) chain B
residue 53
type
sequence R
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

25) chain B
residue 54
type
sequence S
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

26) chain B
residue 55
type
sequence G
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

27) chain B
residue 56
type
sequence K
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

28) chain B
residue 57
type
sequence S
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

29) chain B
residue 58
type
sequence S
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

30) chain B
residue 72
type
sequence T
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

31) chain B
residue 73
type
sequence L
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

32) chain B
residue 78
type
sequence T
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

33) chain B
residue 101
type
sequence G
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

34) chain B
residue 160
type
sequence H
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

35) chain B
residue 161
type
sequence K
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

36) chain B
residue 163
type
sequence D
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

37) chain B
residue 201
type
sequence S
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

38) chain B
residue 202
type
sequence I
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

39) chain B
residue 203
type
sequence Y
description BINDING SITE FOR RESIDUE GNP B 402
source : AC4

40) chain A
residue 52
type BINDING
sequence R
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

41) chain A
residue 101
type BINDING
sequence G
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

42) chain A
residue 160
type BINDING
sequence H
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

43) chain A
residue 161
type BINDING
sequence K
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

44) chain A
residue 163
type BINDING
sequence D
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

45) chain A
residue 202
type BINDING
sequence I
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

46) chain B
residue 52
type BINDING
sequence R
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

47) chain B
residue 53
type BINDING
sequence R
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

48) chain B
residue 54
type BINDING
sequence S
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

49) chain B
residue 55
type BINDING
sequence G
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

50) chain B
residue 56
type BINDING
sequence K
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

51) chain A
residue 53
type BINDING
sequence R
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

52) chain B
residue 57
type BINDING
sequence S
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

53) chain B
residue 58
type BINDING
sequence S
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

54) chain B
residue 72
type BINDING
sequence T
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

55) chain B
residue 78
type BINDING
sequence T
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

56) chain B
residue 101
type BINDING
sequence G
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

57) chain B
residue 160
type BINDING
sequence H
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

58) chain B
residue 161
type BINDING
sequence K
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

59) chain B
residue 163
type BINDING
sequence D
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

60) chain B
residue 202
type BINDING
sequence I
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

61) chain A
residue 54
type BINDING
sequence S
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

62) chain A
residue 55
type BINDING
sequence G
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

63) chain A
residue 56
type BINDING
sequence K
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

64) chain A
residue 57
type BINDING
sequence S
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

65) chain A
residue 58
type BINDING
sequence S
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

66) chain A
residue 72
type BINDING
sequence T
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

67) chain A
residue 78
type BINDING
sequence T
description BINDING => ECO:0000305|Ref.17, ECO:0007744|PDB:2Q3F
source Swiss-Prot : SWS_FT_FI1

68) chain A
residue 76
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q9HB90
source Swiss-Prot : SWS_FT_FI2

69) chain A
residue 201
type BINDING
sequence S
description BINDING => ECO:0000250|UniProtKB:Q9HB90
source Swiss-Prot : SWS_FT_FI2

70) chain B
residue 76
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q9HB90
source Swiss-Prot : SWS_FT_FI2

71) chain B
residue 201
type BINDING
sequence S
description BINDING => ECO:0000250|UniProtKB:Q9HB90
source Swiss-Prot : SWS_FT_FI2


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