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eF-site ID
|
2nvy-B |
PDB Code
|
2nvy |
Chain
|
B |
|
click to enlarge
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Title
|
RNA Polymerase II form II in 150 mM Mn+2 |
Classification
|
TRANSCRIPTION |
Compound
|
DNA-directed RNA polymerase II largest subunit |
Source
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ORGANISM_COMMON: baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
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Sequence
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B: |
FEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDY
TLQDIICEDSTLIEISFGKIYVTKPMVNESDGVTHALYPQ
EARLRNLTYSSGLFVDVKKRTYEKVFIGRLPIMLRSKNCY
LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAG
NIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYG
REGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH
ICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTA
LGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGY
MINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTL
FKKLTKDIFRYMQRTVELAINAKTITSGLKYALATGNWGA
GVSQVLNRYTYSSTLSHLRRTNTPIAKPRQLHNTHWGLVC
PAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGM
EPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTL
RRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDD
ESLGHKELKVRKGHIAKLMATEYQDEYTWSSLLNEGLVEY
IDAEEEESILIAMQPEDLEPDVDPAKRIRVSHHATTFTHC
EIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF
LTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQ
NAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMD
QEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAP
GVRVSGEDVIIGKTTPISSKRDASTPLRSTENGIVDQVLV
TTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITY
RREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKV
AALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYN
GHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPGLRF
GEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMT
VIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAM
NITPRLYTDRSRDF
|
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Description
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
1163 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 3007
|
source |
: AC7
|
|
2)
|
chain |
B |
residue |
1166 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 3007
|
source |
: AC7
|
|
3)
|
chain |
B |
residue |
1182 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 3007
|
source |
: AC7
|
|
4)
|
chain |
B |
residue |
1185 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 3007
|
source |
: AC7
|
|
5)
|
chain |
B |
residue |
836 |
type |
|
sequence |
E
|
description |
BINDING SITE FOR RESIDUE MN A 3010
|
source |
: BC1
|
|
6)
|
chain |
B |
residue |
837 |
type |
catalytic |
sequence |
D
|
description |
788
|
source |
MCSA : MCSA1
|
|
7)
|
chain |
B |
residue |
977-989 |
type |
prosite |
sequence |
GDKFASRHGQKGT
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
|
source |
prosite : PS01166
|
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8)
|
chain |
B |
residue |
1185 |
type |
BINDING |
sequence |
C
|
description |
|
source |
Swiss-Prot : SWS_FT_FI2
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