eF-site ID 2kqg_7-A
PDB Code 2kqg
Model 7
Chain A

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Title A G-rich sequence within the c-kit oncogene promoter forms a parallel G-quadruplex having asymmetric G-tetrad dynamics
Classification DNA
Compound 5'-D(*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*CP*GP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'
Source (2KQG)
Sequence A:  CGGGCGGGCACGAGGGAGGGT
Description (1)  5'-D(*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*CP*GP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'


Functional site

1) chain A
residue 2
type
sequence G
description BINDING SITE FOR RESIDUE K A 22
source : AC1

2) chain A
residue 3
type
sequence G
description BINDING SITE FOR RESIDUE K A 22
source : AC1

3) chain A
residue 6
type
sequence G
description BINDING SITE FOR RESIDUE K A 22
source : AC1

4) chain A
residue 7
type
sequence G
description BINDING SITE FOR RESIDUE K A 22
source : AC1

5) chain A
residue 14
type
sequence G
description BINDING SITE FOR RESIDUE K A 22
source : AC1

6) chain A
residue 15
type
sequence G
description BINDING SITE FOR RESIDUE K A 22
source : AC1

7) chain A
residue 18
type
sequence G
description BINDING SITE FOR RESIDUE K A 22
source : AC1

8) chain A
residue 19
type
sequence G
description BINDING SITE FOR RESIDUE K A 22
source : AC1

9) chain A
residue 3
type
sequence G
description BINDING SITE FOR RESIDUE K A 23
source : AC2

10) chain A
residue 4
type
sequence G
description BINDING SITE FOR RESIDUE K A 23
source : AC2

11) chain A
residue 7
type
sequence G
description BINDING SITE FOR RESIDUE K A 23
source : AC2

12) chain A
residue 8
type
sequence G
description BINDING SITE FOR RESIDUE K A 23
source : AC2

13) chain A
residue 15
type
sequence G
description BINDING SITE FOR RESIDUE K A 23
source : AC2

14) chain A
residue 16
type
sequence G
description BINDING SITE FOR RESIDUE K A 23
source : AC2

15) chain A
residue 19
type
sequence G
description BINDING SITE FOR RESIDUE K A 23
source : AC2

16) chain A
residue 20
type
sequence G
description BINDING SITE FOR RESIDUE K A 23
source : AC2


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