eF-site ID 2jg4-AB
PDB Code 2jg4
Chain A, B

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Title Substrate-free IDE structure in its closed conformation
Classification HYDROLASE
Compound INSULIN DEGRADING ENZYME
Source (IDE_HUMAN)
Sequence A:  NNPAIKRIGNHITKSPEDKREYRGLELANGIKVLLISDPT
TDKSSAALDVHIGSLSDPPNIAGLSHFCEHMLFLGTKKYP
KENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGAL
DRFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDAWRLF
QLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELL
KFHSAYYSSNLMAVCVLGRESLDDLTNLVVKLFSEVENKN
VPLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDL
QKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGG
QKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLR
AEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGILH
YYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVS
KSFEGKTDRTEEWYGTQYKQEAIPDEVIKKWQNADLNGKF
KLPTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFK
QDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKD
SLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILL
KKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHA
MYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSR
LHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQ
LVRYREVQLPDRGWFVYQQRNEVHNNCGIEIYYQTDMQST
SENMFLELFCQIISEPCFNTLRTKEQLGFIVFSGPRRANG
IQGLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEEAF
QKHIQALAIRRLDKPKKLSAECAKYWGEIISQQYNFDRDN
TEVAYLKTLTKEDIIKFYKEMLAVDAPRRHKVSVHVLARE
MDSCPVVGNLSQAPALPQPEVIQNMTEFKRGLPLFPLVKP
H
B:  PAIKRIGNHITKSPEDKREYRGLELANGIKVLLISDPTTD
KSSAALDVHIGSLSDPPNIAGLSHFCEHMLFLGTKKYPKE
NEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDR
FAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDAWRLFQL
EKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKF
HSAYYSSNLMAVCVLGRESLDDLTNLVVKLFSEVENKNVP
LPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQK
YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQK
EGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAE
GPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGILHYY
PLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKS
FEGKTDRTEEWYGTQYKQEAIPDEVIKKWQNADLNGKFKL
PTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQD
DKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSL
NEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKK
IIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMY
YLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLH
IEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLV
RYREVQLPDRGWFVYQQRNEVHNNCGIEIYYQTDMQSTSE
NMFLELFCQIISEPCFNTLRTKEQLGFIVFSGPRRANGIQ
GLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEEAFQK
HIQALAIRRLDKPKKLSAECAKYWGEIISQQYNFDRDNTE
VAYLKTLTKEDIIKFYKEMLAVDAPRRHKVSVHVLAREMS
CPVVGNLSQAPALPQPEVIQNMTEFKRGLPLFPLVKPH
Description


Functional site

1) chain A
residue 108
type
sequence H
description BINDING SITE FOR RESIDUE ZN A2012
source : AC1

2) chain A
residue 112
type
sequence H
description BINDING SITE FOR RESIDUE ZN A2012
source : AC1

3) chain A
residue 189
type
sequence E
description BINDING SITE FOR RESIDUE ZN A2012
source : AC1

4) chain B
residue 108
type
sequence H
description BINDING SITE FOR RESIDUE ZN B2012
source : AC2

5) chain B
residue 112
type
sequence H
description BINDING SITE FOR RESIDUE ZN B2012
source : AC2

6) chain B
residue 189
type
sequence E
description BINDING SITE FOR RESIDUE ZN B2012
source : AC2

7) chain B
residue 201
type
sequence L
description BINDING SITE FOR RESIDUE DIO B2013
source : AC3

8) chain B
residue 205
type
sequence E
description BINDING SITE FOR RESIDUE DIO B2013
source : AC3

9) chain B
residue 208
type
sequence T
description BINDING SITE FOR RESIDUE DIO B2013
source : AC3

10) chain B
residue 477
type
sequence R
description BINDING SITE FOR RESIDUE DIO B2013
source : AC3

11) chain A
residue 800
type
sequence Q
description BINDING SITE FOR RESIDUE DIO A2013
source : AC4

12) chain A
residue 913
type
sequence S
description BINDING SITE FOR RESIDUE DIO A2013
source : AC4

13) chain A
residue 800
type
sequence Q
description BINDING SITE FOR RESIDUE DIO A2014
source : AC5

14) chain A
residue 839
type
sequence R
description BINDING SITE FOR RESIDUE DIO A2014
source : AC5

15) chain A
residue 840
type
sequence A
description BINDING SITE FOR RESIDUE DIO A2014
source : AC5

16) chain A
residue 841
type
sequence N
description BINDING SITE FOR RESIDUE DIO A2014
source : AC5

17) chain A
residue 842
type
sequence G
description BINDING SITE FOR RESIDUE DIO A2014
source : AC5

18) chain B
residue 800
type
sequence Q
description BINDING SITE FOR RESIDUE DIO B2014
source : AC6

19) chain B
residue 839
type
sequence R
description BINDING SITE FOR RESIDUE DIO B2014
source : AC6

20) chain B
residue 841
type
sequence N
description BINDING SITE FOR RESIDUE DIO B2014
source : AC6

21) chain B
residue 842
type
sequence G
description BINDING SITE FOR RESIDUE DIO B2014
source : AC6

22) chain A
residue 193
type MOD_RES
sequence N
description N6-succinyllysine => ECO:0000250|UniProtKB:Q9JHR7
source Swiss-Prot : SWS_FT_FI6

23) chain A
residue 698
type MOD_RES
sequence D
description N6-succinyllysine => ECO:0000250|UniProtKB:Q9JHR7
source Swiss-Prot : SWS_FT_FI6

24) chain B
residue 193
type MOD_RES
sequence N
description N6-succinyllysine => ECO:0000250|UniProtKB:Q9JHR7
source Swiss-Prot : SWS_FT_FI6

25) chain B
residue 698
type MOD_RES
sequence D
description N6-succinyllysine => ECO:0000250|UniProtKB:Q9JHR7
source Swiss-Prot : SWS_FT_FI6

26) chain A
residue 112
type ACT_SITE
sequence H
description Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU10096, ECO:0000305|PubMed:10684867, ECO:0000305|PubMed:17051221, ECO:0000305|PubMed:19321446, ECO:0000305|PubMed:23922390
source Swiss-Prot : SWS_FT_FI1

27) chain B
residue 112
type ACT_SITE
sequence H
description Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU10096, ECO:0000305|PubMed:10684867, ECO:0000305|PubMed:17051221, ECO:0000305|PubMed:19321446, ECO:0000305|PubMed:23922390
source Swiss-Prot : SWS_FT_FI1

28) chain A
residue 109
type BINDING
sequence F
description BINDING => ECO:0000255|PROSITE-ProRule:PRU10096, ECO:0000269|PubMed:17051221, ECO:0000269|PubMed:17613531, ECO:0000269|PubMed:18986166, ECO:0000269|PubMed:19321446, ECO:0007744|PDB:2G54, ECO:0007744|PDB:2JG4, ECO:0007744|PDB:3CWW, ECO:0007744|PDB:3N56, ECO:0007744|PDB:3N57
source Swiss-Prot : SWS_FT_FI2

29) chain A
residue 113
type BINDING
sequence M
description BINDING => ECO:0000255|PROSITE-ProRule:PRU10096, ECO:0000269|PubMed:17051221, ECO:0000269|PubMed:17613531, ECO:0000269|PubMed:18986166, ECO:0000269|PubMed:19321446, ECO:0007744|PDB:2G54, ECO:0007744|PDB:2JG4, ECO:0007744|PDB:3CWW, ECO:0007744|PDB:3N56, ECO:0007744|PDB:3N57
source Swiss-Prot : SWS_FT_FI2

30) chain A
residue 190
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU10096, ECO:0000269|PubMed:17051221, ECO:0000269|PubMed:17613531, ECO:0000269|PubMed:18986166, ECO:0000269|PubMed:19321446, ECO:0007744|PDB:2G54, ECO:0007744|PDB:2JG4, ECO:0007744|PDB:3CWW, ECO:0007744|PDB:3N56, ECO:0007744|PDB:3N57
source Swiss-Prot : SWS_FT_FI2

31) chain B
residue 109
type BINDING
sequence F
description BINDING => ECO:0000255|PROSITE-ProRule:PRU10096, ECO:0000269|PubMed:17051221, ECO:0000269|PubMed:17613531, ECO:0000269|PubMed:18986166, ECO:0000269|PubMed:19321446, ECO:0007744|PDB:2G54, ECO:0007744|PDB:2JG4, ECO:0007744|PDB:3CWW, ECO:0007744|PDB:3N56, ECO:0007744|PDB:3N57
source Swiss-Prot : SWS_FT_FI2

32) chain B
residue 113
type BINDING
sequence M
description BINDING => ECO:0000255|PROSITE-ProRule:PRU10096, ECO:0000269|PubMed:17051221, ECO:0000269|PubMed:17613531, ECO:0000269|PubMed:18986166, ECO:0000269|PubMed:19321446, ECO:0007744|PDB:2G54, ECO:0007744|PDB:2JG4, ECO:0007744|PDB:3CWW, ECO:0007744|PDB:3N56, ECO:0007744|PDB:3N57
source Swiss-Prot : SWS_FT_FI2

33) chain B
residue 190
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU10096, ECO:0000269|PubMed:17051221, ECO:0000269|PubMed:17613531, ECO:0000269|PubMed:18986166, ECO:0000269|PubMed:19321446, ECO:0007744|PDB:2G54, ECO:0007744|PDB:2JG4, ECO:0007744|PDB:3CWW, ECO:0007744|PDB:3N56, ECO:0007744|PDB:3N57
source Swiss-Prot : SWS_FT_FI2

34) chain A
residue 337
type BINDING
sequence L
description in the exosite
source Swiss-Prot : SWS_FT_FI3

35) chain B
residue 337
type BINDING
sequence L
description in the exosite
source Swiss-Prot : SWS_FT_FI3

36) chain A
residue 360
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:18986166
source Swiss-Prot : SWS_FT_FI4

37) chain B
residue 360
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:18986166
source Swiss-Prot : SWS_FT_FI4

38) chain A
residue 430
type BINDING
sequence P
description BINDING => ECO:0000250|UniProtKB:P35559
source Swiss-Prot : SWS_FT_FI5

39) chain A
residue 896
type BINDING
sequence K
description BINDING => ECO:0000250|UniProtKB:P35559
source Swiss-Prot : SWS_FT_FI5

40) chain B
residue 430
type BINDING
sequence P
description BINDING => ECO:0000250|UniProtKB:P35559
source Swiss-Prot : SWS_FT_FI5

41) chain B
residue 896
type BINDING
sequence K
description BINDING => ECO:0000250|UniProtKB:P35559
source Swiss-Prot : SWS_FT_FI5

42) chain A
residue 95-118
type prosite
sequence GSLSDPPNIAGLSHFCEHMLFLGT
description INSULINASE Insulinase family, zinc-binding region signature. GslsdppniaGlSHFCEHMlFlGT
source prosite : PS00143


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