eF-site ID 2ja6-A PDB Code 2ja6 Chain A click to enlarge Title CPD lesion containing RNA Polymerase II elongation complex B Classification TRANSFERASE Compound DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT Source ORGANISM_COMMON: BAKERS' YEAST; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; Sequence A:  VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETM DETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHF GHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNEL MRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQL VSRGGCGNTQPTIRKDGLKLVGSWKKDRDEPELRVLSTEE ILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPV RPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPH HAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIR ARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGV PKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVI RDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDE MNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQD TLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAII KPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGML IIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEA KKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEAR DKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR GLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE DIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQ VLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQN AQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEI IQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVL SNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLKKVTS GVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRS AIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSL QQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFV IWSEDNDEKLIIRCRVVRPAEEDHMLKKIENTMLENITLR GVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLS EVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNT GALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMA PIGTGAFDVMIDEESLVKYMP Description Functional site 1) chain A residue 481 type sequence D description BINDING SITE FOR RESIDUE MG A2457 source : AC1 2) chain A residue 483 type sequence D description BINDING SITE FOR RESIDUE MG A2457 source : AC1 3) chain A residue 485 type sequence D description BINDING SITE FOR RESIDUE MG A2457 source : AC1 4) chain A residue 108 type sequence M description BINDING SITE FOR RESIDUE ZN A2464 source : AC8 5) chain A residue 110 type sequence C description BINDING SITE FOR RESIDUE ZN A2464 source : AC8 6) chain A residue 148 type sequence C description BINDING SITE FOR RESIDUE ZN A2464 source : AC8 7) chain A residue 167 type sequence C description BINDING SITE FOR RESIDUE ZN A2464 source : AC8 8) chain A residue 67 type sequence C description BINDING SITE FOR RESIDUE ZN A2465 source : AC9 9) chain A residue 70 type sequence C description BINDING SITE FOR RESIDUE ZN A2465 source : AC9 10) chain A residue 77 type sequence C description BINDING SITE FOR RESIDUE ZN A2465 source : AC9 11) chain A residue 80 type sequence H description BINDING SITE FOR RESIDUE ZN A2465 source : AC9 12) chain A residue 483 type catalytic sequence D description 788 source MCSA : MCSA1 13) chain A residue 485 type catalytic sequence D description 788 source MCSA : MCSA1 14) chain A residue 483 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1 15) chain A residue 485 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1 16) chain A residue 107 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 17) chain A residue 110 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 18) chain A residue 148 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 19) chain A residue 167 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 20) chain A residue 481 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1

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