eF-site ID 2hvq-A
PDB Code 2hvq
Chain A

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Title Structure of Adenylated full-length T4 RNA Ligase 2
Classification LIGASE
Compound Hypothetical 37.6 kDa protein in Gp24-hoc intergenic region
Source Enterobacteria phage T4 (Bacteriophage T4) (Y10A_BPT4)
Sequence A:  SMFKKYSSLENHYNSKFIEKLYSLGLTGGEWVAREXIHGT
NFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSI
KAVQDIMETSAVVSYQVFGEFAGPGIQKNVDYGDKDFYVF
DIIVTTESGDVTYVDDYMMESFCNTFKFKMAPLLGRGKFE
ELIKLPNDLDSVVQDYNFTVDHAGLVDANKCVWNAEAKGE
VFTAEGYVLKPCYPSWLRNGNRVAIKCKNSKFSEKKVELS
EADNKLVGILACYVTLNRVNNVISKIGPKDFGKVMGLTVQ
DILEETSREGITLTQADNPSLIKKELVKMVQDVLRPA
Description


Functional site

1) chain A
residue 35
type
sequence X
description BINDING SITE FOR RESIDUE MG A 335
source : AC1

2) chain A
residue 37
type
sequence H
description BINDING SITE FOR RESIDUE MG A 335
source : AC1

3) chain A
residue 204
type
sequence E
description BINDING SITE FOR RESIDUE MG A 335
source : AC1

4) chain A
residue 162
type
sequence I
description BINDING SITE FOR RESIDUE MG A 336
source : AC2

5) chain A
residue 164
type
sequence L
description BINDING SITE FOR RESIDUE MG A 336
source : AC2

6) chain A
residue 166
type
sequence N
description BINDING SITE FOR RESIDUE MG A 336
source : AC2

7) chain A
residue 206
type
sequence Y
description BINDING SITE FOR RESIDUE MG A 336
source : AC2

8) chain A
residue 162
type BINDING
sequence I
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI5

9) chain A
residue 164
type BINDING
sequence L
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI5

10) chain A
residue 166
type BINDING
sequence N
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI5

11) chain A
residue 204
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI5

12) chain A
residue 206
type BINDING
sequence Y
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI5

13) chain A
residue 218
type SITE
sequence N
description Interaction with RNA => ECO:0000255|HAMAP-Rule:MF_04150
source Swiss-Prot : SWS_FT_FI6

14) chain A
residue 314
type SITE
sequence K
description Interaction with RNA => ECO:0000255|HAMAP-Rule:MF_04150
source Swiss-Prot : SWS_FT_FI6

15) chain A
residue 34
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:14962393, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI2

16) chain A
residue 36
type BINDING
sequence I
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:14962393, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI2

17) chain A
residue 40
type BINDING
sequence N
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:14962393, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI2

18) chain A
residue 99
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:14962393, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI2

19) chain A
residue 225
type BINDING
sequence K
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:14962393, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI2

20) chain A
residue 227
type BINDING
sequence K
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:14962393, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI2

21) chain A
residue 55
type BINDING
sequence R
description BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:14962393
source Swiss-Prot : SWS_FT_FI4

22) chain A
residue 35
type BINDING
sequence X
description BINDING => ECO:0000269|PubMed:14962393, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI3

23) chain A
residue 35
type ACT_SITE
sequence X
description N6-AMP-lysine intermediate => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:17018278
source Swiss-Prot : SWS_FT_FI1


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