eF-site ID 2e2j-I
PDB Code 2e2j
Chain I

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Title RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP
Classification TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID
Compound 5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3'
Source ORGANISM_COMMON: baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae;
Sequence I:  TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSP
LVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSR
ENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ
Description


Functional site

1) chain I
residue 7
type
sequence C
description BINDING SITE FOR RESIDUE ZN I 203
source : AC5

2) chain I
residue 10
type
sequence C
description BINDING SITE FOR RESIDUE ZN I 203
source : AC5

3) chain I
residue 29
type
sequence C
description BINDING SITE FOR RESIDUE ZN I 203
source : AC5

4) chain I
residue 31
type
sequence T
description BINDING SITE FOR RESIDUE ZN I 203
source : AC5

5) chain I
residue 32
type
sequence C
description BINDING SITE FOR RESIDUE ZN I 203
source : AC5

6) chain I
residue 75
type
sequence C
description BINDING SITE FOR RESIDUE ZN I 204
source : AC6

7) chain I
residue 78
type
sequence C
description BINDING SITE FOR RESIDUE ZN I 204
source : AC6

8) chain I
residue 103
type
sequence C
description BINDING SITE FOR RESIDUE ZN I 204
source : AC6

9) chain I
residue 106
type
sequence C
description BINDING SITE FOR RESIDUE ZN I 204
source : AC6

10) chain I
residue 75-110
type prosite
sequence CPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIF
description ZF_TFIIS_1 Zinc finger TFIIS-type signature. CpkChsrenvffqSQQRRkDTSmvlffvCls...CshiF
source prosite : PS00466

11) chain I
residue 6-32
type prosite
sequence FCRDCNNMLYPREDKENNRLLFECRTC
description RNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FCRDCNNMLypredkennrllfeCrtC
source prosite : PS01030

12) chain I
residue 10
type MOD_RES
sequence C
description Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956
source Swiss-Prot : SWS_FT_FI3

13) chain I
residue 32
type MOD_RES
sequence C
description Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956
source Swiss-Prot : SWS_FT_FI3

14) chain I
residue 78
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:32142654, ECO:0007744|PubMed:22106047
source Swiss-Prot : SWS_FT_FI4

15) chain I
residue 103
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:32142654, ECO:0007744|PubMed:22106047
source Swiss-Prot : SWS_FT_FI4

16) chain I
residue 106
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:32142654, ECO:0007744|PubMed:22106047
source Swiss-Prot : SWS_FT_FI4

17) chain I
residue 40
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:18407956
source Swiss-Prot : SWS_FT_FI5


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