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eF-site ID
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2dym-ABCDEFGH |
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PDB Code
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2dym |
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Chain
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A, B, C, D, E, F, G, H |
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click to enlarge
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Title
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The crystal structure of Saccharomyces cerevisiae Atg5- Atg16(1-46) complex |
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Classification
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PROTEIN TURNOVER/PROTEIN TURNOVER |
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Compound
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Autophagy protein 5 |
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Source
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (ATG16_YEAST) |
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Sequence
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A: |
AHMNDIKQLLWNGELNVLVSIDPSFEIAVLRIRVPRETYL
VNYMPLIWNKIKSYFWFEHNKTPIPWNYPVGVLFDCLAGF
TTSFENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQAE
KFWFHQWKQVCFILNGSSKAIMSLSVNEARKFWGSVITRN
FQDFIEISNKISSSRPRHIPLIIQTSRTTFRISQPTISMT
GVNPTLKDIEGDILDVKDVMVICQGIEIPWHMLLYDLYSK
LRSFDGFLYITLVP
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| B: |
SMDDLLIRRLTDRNDKEAHLNELF
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| C: |
AHMNDIKQLLWNGELNVLVSIDPSFLMKGSEIAVLRIRVP
RETYLVNYMPLIWNKISEKYFWFEHNKTPIPWNYPVGVLF
DCLASFENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQ
AEKFWFHQWKQVCFILNGSSKAIMSLSVNEARKFWGSVIT
RNFQDFIEISNKISSSRPRHIPLIIQTSRFRISQPTISMT
GVNPTLKDIEGDIDVMVICQGIEIPWHMLLYDLYSKLRSF
DGFLYITLVPI
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| D: |
SMDDLLIRRLTDRNDKEAHLNELF
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| E: |
AHMNDIKQLLWNGELNVLVSIDPSFLMEIAVLRIRVPRET
YLVNYMPLIWNKEKYFWFEHNKTPIPWNYPVGVLFDCLAS
FENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKFW
FHQWKQVCFILNGSSKAIMSLSVNEARKFWGSVITRNFQD
FIEISNKISSSRPRHIPLIIQTSRTRISQPTISMTGVNPT
LKDIEGDILDVMVICQGIEIPWHMLLYDLYSKLRSFDGFL
YITLVPI
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| F: |
SMDDLLIRRLTDRNDKEAHLNELF
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| G: |
AHMNDIKQLLWNGELNVLVSIDPSFLMKEIAVLRIRVPRE
TYLVNYMPLIWNKIKSFLEKYFWFEHNKTPIPWNYPVGVL
FDCLATFTTSFENQVKDVLTFLRIHLVMGDSLPPTIIPIA
SSKTQAEKFWFHQWKQVCFILNGSSKAIMSLSVNEARKFW
GSVITRNFQDFIEISNKISRPRHIPLIIQTSRTSGTFRIS
QPTISMTGVNPTLKDIEGDILDVKDVMVICQGIEIPWHML
LYDLYSKLRSFDGFLYITLVPI
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| H: |
SMDDLLIRRLTDRNDKEAHLNELF
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Description
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Functional site
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1)
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chain |
A |
| residue |
149 |
| type |
CROSSLNK |
| sequence |
K
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| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ATG12)
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| source |
Swiss-Prot : SWS_FT_FI1
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2)
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chain |
C |
| residue |
149 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ATG12)
|
| source |
Swiss-Prot : SWS_FT_FI1
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3)
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chain |
E |
| residue |
149 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ATG12)
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| source |
Swiss-Prot : SWS_FT_FI1
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4)
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chain |
G |
| residue |
149 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ATG12)
|
| source |
Swiss-Prot : SWS_FT_FI1
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