eF-site ID 2dy3-ABCD PDB Code 2dy3 Chain A, B, C, D click to enlarge Title Crystal Structure of alanine racemase from Corynebacterium glutamicum Classification ISOMERASE Compound Alanine racemase Source Corynebacterium glutamicum (Brevibacterium flavum) (ALR_CORGL) Sequence A:  MNLLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNH GVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCW IWTPEQDFRAAIDRNIDLAVISPAHAKALIETDAEHIRVS IKIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLA ETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRSDL HMEMVRPGLAFYGLEPVAGLEHGLKPAMTWEAKVSVVKQI ERGFVAVVPAGYADGMPRHAQGKFSVTIDGLDYPQVGRVC MDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERLDT INYEVVCRPTGRTVRAYV B:  MNLLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNH GVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCW IWTPEQDFRAAIDRNIDLAVISPAHAKALIETDAEHIRVS IKIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLA CAPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTR SDLHMEMVRPGLAFYGLEPVAGLEHGLKPAMTWEAKVSVV KQIRGFVAVVPAGYADGMPRHAQGKFSVTIDGLDYPQVGR VCMDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERL DTINYEVVCRPTGRTVRAYV C:  MNLLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNH GVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCW IWTPEQDFRAAIDRNIDLAVISPAHAKALIETDAEHIRVS IKIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLA CADEPPETDRQIIAFRRALALARKHGLECPVNHVCNSPAF LTRSDLHMEMVRPGLAFYGLEPVAGLEHGLKPAMTWEAKV SVVKQIRGFVAVVPAGYADGMPRHAQGKFSVTIDGLDYPQ VGRVCMDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFA ERLDTINYEVVCRPTGRTVRAYV D:  MNLLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNH GVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCW IWTPEQDFRAAIDRNIDLAVISPAHAKALIETDAEHIRVS IKIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLA CADEPTDRQIIAFRRALALARKHGLECPVNHVCNSPAFLT RSDLHMEMVRPGLAFYGLEPVAGLEHGLKPAMTWEAKVSV VKQIEAGQGFVAVVPAGYADGMPRHAQGKFSVTIDGLDYP QVGRVCMDQFVISLGDNPHGVEAGAKAVIFGENGHDATDF AERLDTINYEVVCRPTGRTVRAYV Description Functional site 1) chain A residue 32 type sequence V description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 2) chain A residue 34 type sequence K description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 3) chain A residue 38 type sequence Y description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 4) chain A residue 80 type sequence W description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 5) chain A residue 158 type sequence H description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 6) chain A residue 198 type sequence N description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 7) chain A residue 199 type sequence S description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 8) chain A residue 214 type sequence R description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 9) chain A residue 216 type sequence G description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 10) chain A residue 217 type sequence L description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 11) chain A residue 346 type sequence Y description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 12) chain B residue 305 type sequence D description BINDING SITE FOR RESIDUE PLP A 401 source : AC1 13) chain B residue 32 type sequence V description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 14) chain B residue 34 type sequence K description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 15) chain B residue 38 type sequence Y description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 16) chain B residue 80 type sequence W description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 17) chain B residue 158 type sequence H description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 18) chain B residue 198 type sequence N description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 19) chain B residue 199 type sequence S description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 20) chain B residue 214 type sequence R description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 21) chain B residue 215 type sequence P description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 22) chain B residue 216 type sequence G description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 23) chain B residue 217 type sequence L description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 24) chain B residue 346 type sequence Y description BINDING SITE FOR RESIDUE PLP B 401 source : AC2 25) chain C residue 32 type sequence V description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 26) chain C residue 34 type sequence K description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 27) chain C residue 38 type sequence Y description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 28) chain C residue 80 type sequence W description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 29) chain C residue 158 type sequence H description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 30) chain C residue 198 type sequence N description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 31) chain C residue 199 type sequence S description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 32) chain C residue 200 type sequence P description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 33) chain C residue 214 type sequence R description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 34) chain C residue 215 type sequence P description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 35) chain C residue 216 type sequence G description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 36) chain C residue 217 type sequence L description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 37) chain C residue 346 type sequence Y description BINDING SITE FOR RESIDUE PLP C 401 source : AC3 38) chain D residue 32 type sequence V description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 39) chain D residue 34 type sequence K description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 40) chain D residue 38 type sequence Y description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 41) chain D residue 80 type sequence W description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 42) chain D residue 158 type sequence H description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 43) chain D residue 198 type sequence N description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 44) chain D residue 199 type sequence S description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 45) chain D residue 214 type sequence R description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 46) chain D residue 215 type sequence P description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 47) chain D residue 216 type sequence G description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 48) chain D residue 217 type sequence L description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 49) chain D residue 346 type sequence Y description BINDING SITE FOR RESIDUE PLP D 401 source : AC4 50) chain A residue 34 type ACT_SITE sequence K description Proton acceptor; specific for D-alanine => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI1 51) chain B residue 34 type ACT_SITE sequence K description Proton acceptor; specific for D-alanine => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI1 52) chain C residue 34 type ACT_SITE sequence K description Proton acceptor; specific for D-alanine => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI1 53) chain D residue 34 type ACT_SITE sequence K description Proton acceptor; specific for D-alanine => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI1 54) chain A residue 129 type BINDING sequence R description BINDING => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI3 55) chain A residue 304 type BINDING sequence M description BINDING => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI3 56) chain B residue 129 type BINDING sequence R description BINDING => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI3 57) chain B residue 304 type BINDING sequence M description BINDING => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI3 58) chain C residue 129 type BINDING sequence R description BINDING => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI3 59) chain C residue 304 type BINDING sequence M description BINDING => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI3 60) chain D residue 129 type BINDING sequence R description BINDING => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI3 61) chain D residue 304 type BINDING sequence M description BINDING => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI3 62) chain A residue 34 type MOD_RES sequence K description N6-(pyridoxal phosphate)lysine source Swiss-Prot : SWS_FT_FI4 63) chain B residue 34 type MOD_RES sequence K description N6-(pyridoxal phosphate)lysine source Swiss-Prot : SWS_FT_FI4 64) chain C residue 34 type MOD_RES sequence K description N6-(pyridoxal phosphate)lysine source Swiss-Prot : SWS_FT_FI4 65) chain D residue 34 type MOD_RES sequence K description N6-(pyridoxal phosphate)lysine source Swiss-Prot : SWS_FT_FI4

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