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eF-site ID
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2d3o-1RSW |
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PDB Code
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2d3o |
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Chain
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1, R, S, W |
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click to enlarge
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Title
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Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans |
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Classification
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RIBOSOME |
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Compound
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23S RIBOSOMAL RNA |
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Source
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ORGANISM_SCIENTIFIC: Deinococcus radiodurans; |
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Sequence
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1: |
NKVEFKVSVPAAEVNRAYDQVWAGLARDVRVPGFRPGKAP
RKVIENRVGKGYVESQVRDRLLETHYSQGLRELGLNLVDA
TVDPQDVQSGQAFEFTVKGE
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| R: |
SHYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDA
IQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVR
LAEGQSIEALAGQ
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| S: |
PSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRD
QKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVAL
VDPETGKATRVRKQIVDGKKVRVAVASGKT
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| W: |
MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQP
HRVRQLRREVAQLNTVKAELARKGEQ
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Description
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Functional site
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1)
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chain |
R |
| residue |
76-91 |
| type |
prosite |
| sequence |
KKAIVRLAEGQSIEAL
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| description |
RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAIVRLAegqsieaL
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| source |
prosite : PS00050
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2)
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chain |
W |
| residue |
39-53 |
| type |
prosite |
| sequence |
QPHRVRQLRREVAQL
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| description |
RIBOSOMAL_L29 Ribosomal protein L29 signature. QPHRVRqLRREVAQL
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| source |
prosite : PS00579
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3)
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chain |
S |
| residue |
19-36 |
| type |
prosite |
| sequence |
GDTVIVLSGKHKGQTGKV
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| description |
RIBOSOMAL_L24 Ribosomal protein L24 signature. GDtViVLsGkhKGqt.GkV
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| source |
prosite : PS01108
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