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eF-site ID
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2d3o-01RSW |
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PDB Code
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2d3o |
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Chain
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0, 1, R, S, W |
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click to enlarge
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Title
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Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans |
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Classification
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RIBOSOME |
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Compound
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23S RIBOSOMAL RNA |
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Source
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ORGANISM_SCIENTIFIC: Deinococcus radiodurans; |
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Sequence
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0: |
GGUCAAGAUAGUAAGGGUCCACGGUGGAUGCCCUGGCGCU
GGAGCCGAUGAAGGACGCGAUUACCUGCGAAAAGCCCCGA
CGAGCUGGAGAUACGCUUUGACUCGGGGAUGUCCGAAUGG
GGAAACCCACCUCGUAAGAGGUAUCCGCAAGGAUGGGAAC
UCAGGGAACUGAAACAUCUCAGUACCUGAAGGAGAAGAAA
GAGAAUUCGAUUCCGUUAGUAGCGGCGAGCGAACCCGGAU
CAGCCCAAAUUCAACCCCUCAAGCCGAAGUGGCUGGAAAG
CUACACCUCAGAAGGUGAGAGUCCUGUAGGCGAACGAGCG
GUUGACUGUAAGGUCGUUGUUCGUGAAACGAUGACUGAAU
CCGCGCGGACCACCGCGCAAGGCUAAAUACUCCCAGUGAC
CGAUAGCGCAUAGUACCGUGAGGGAAAGGUGAAAAGAACC
CCGGGAGGGGAGUGAAAGAGAACCUGAAACCGUGGACUUA
CAAGCAGUCAUGGCACCUUAUGCGUGUUAUGGCGUGCCUA
UUGAAGCAUGAGCCGGCGACUUAGACCUGACGUGCGAGCU
UAAGUUGAAAAACGGAGGCGGAGCGAAAGCGAGUCCGAAU
AGGGCGGCAUUAGUACGUCGGGCUAGACUCGAAACCAGGU
GAGCUAAGCAUGACCAGGUUGAAACCCCCGUGACAGGGGG
CGGAGGACCGAACCGGUGCCUGCUGAAACAGUCUCGGAUG
AGUUGUGUUUAGGAGUGAAAAGCUAACCGAACCUGGAGAU
AGCUAGUUCUCCCCGAAAUGUAUUGAGGUACAGCCUCGGA
UGUUGACCAUGUCCUGUAGAGCACUCACAAGGCUAAAACC
UUAUGAAACUCCGAAGGGGCACGCGUUUAGUCCGGGAGUG
AGGCUGCGAGAGCUAACUUCCGUAGCCGAGAGGGAAACAA
CCCAGACCAUCAGCUAAGGUCCCUAAAUGAUCGCUCAGUG
GUUAAGGAUGUGUCGUCGCAUAGACAGCCAGGAGGUUGGC
UUAGAAGCAGCCACCCUUCAAAGAGUGCGUAAUAGCUCAC
UGGUCGAGUGACGAUGCGCCGAAAAUGAUCGGGGCUCAAG
UGAUCUACCGAAGCUAUGGAUUCAACUCGCGAAGCGAGUU
GUCUGGUAGGGGAGCGUUCAGUCCGCGGAGAAGCCAUACC
GGAAGGAGUGGUGGAGCCGACUGAAGUGCGGAUGCCGGCA
UGAGUAACGAUAAAAGAAGUGAGAAUCUUCUUCGCCGUAA
GGACAAGGGUUCCUGGGGAAGGGUCGUCCGCCCAGGGAAA
GUCGGGACCUAAGGUGAGGCCGAACGGCGCAGCCGAUGGA
CAGCAGGUCAAGAUUCCUGCACCGAUCAUGUGGAGUGAUG
GAGGGACGCAUUACGCUAUCCAAUGCCAAGCUAUGGCUAU
GCUGGUUGGUACGCUCAAGGGCGAUCGGGUCAGAAAAUCU
ACCGGUCACAUGCCUCAGACGUAUCGGGAGCUUCCUCGGA
AGCGAAGUUGGAAACGCGACGGUGCCAAGAAAAGCUUCUA
AACGUUGAAACAUGAUUGCCCGUACCGCAAACCGACACAG
GUGUCCGAGUGUCAAUGCACUAAGGCGCGCGAGAGAACCC
UCGUUAAGGAACUUUGCAAUCUCACCCCGUAACUUCGGAA
GAAGGGGUCCCCACGCUUCGCGUGGGGCGCAGUGAAUAGG
CCCAGGCGACUGUUUACCAAAAUCACAGCACUCUGCCAAC
ACGAACAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGC
CGGAAGGUCAAGUGGAGCGGUGCAAGCUGCGAAAUGAAGC
CCCGGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUA
GCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAAG
GCGUAACGAUCUGGGCGCUGUCUCAACGAGGGACUCGGUG
AAAUUGAAUUGGCUGUAAAGAUGCGGCCUACCCGUAGCAG
GACGAAAAGACCCCGUGGAGCUUUACUAUAGUCUGGCAUU
GGGAUUCGGGUUUCUCUGCGUAGGAUAGGUGGGAGCCUGC
GAAACUGGCCUUUUGGGGUCGGUGGAGGCAACGGUGAAAU
ACCACCCUGAGAAACUUGGAUUUCUAACCUGAAAAAUCAC
UUUCGGGGACCGUGCUUGGCGGGUAGUUUGACUGGGGCGG
UCGCCUCCCAAAAUGUAACGGAGGCGCCCAAAGGUCACCU
CAAGACGGUUGGAAAUCGUCUGUAGAGCGCAAAGGUAGAA
GGUGGCUUGACUGCGAGACUGACACGUCGAGCAGGGAGGA
AACUCGGGCUUAGUGAACCGGUGGUACCGUGUGGAAGGGC
CAUCGAUCAACGGAUAAAAGUUACCCCGGGGAUAACAGGC
UGAUCUCCCCCGAGAGUCCAUAUCGGCGGGGAGGUUUGGC
ACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGAAGAAGG
UCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCG
AGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCUCUAUC
CGCUACGGGCGCAGGAGAAUUGAGGGGAGUUGCUCCUAGU
ACGAGAGGACCGGAGUGAACGGACCGCUGGUCUCCCUGCU
GUCGUACCAACGGCACAUGCAGGGUAGCUAUGUCCGGAAC
GGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCAGCCCCA
AGAUGAGUUCUCCCACUGUUUAUCAGGUAAGACUCCCGGA
AGACCACCGGGUUAAGAGGCCAGGCGUGCACGCAUAGCAA
UGUGUUCAGCGGACUGGUGCUCAUCAGUCGAGGUCUUGAC
CA
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| 1: |
NKVEFKVSVPAAEVNRAYDQVWAGLARDVRVPGFRPGKAP
RKVIENRVGKGYVESQVRDRLLETHYSQGLRELGLNLVDA
TVDPQDVQSGQAFEFTVKGE
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| R: |
SHYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDA
IQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVR
LAEGQSIEALAGQ
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| S: |
PSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRD
QKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVAL
VDPETGKATRVRKQIVDGKKVRVAVASGKT
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| W: |
MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQP
HRVRQLRREVAQLNTVKAELARKGEQ
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Description
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Functional site
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1)
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chain |
S |
| residue |
19-36 |
| type |
prosite |
| sequence |
GDTVIVLSGKHKGQTGKV
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| description |
RIBOSOMAL_L24 Ribosomal protein L24 signature. GDtViVLsGkhKGqt.GkV
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| source |
prosite : PS01108
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2)
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chain |
W |
| residue |
39-53 |
| type |
prosite |
| sequence |
QPHRVRQLRREVAQL
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| description |
RIBOSOMAL_L29 Ribosomal protein L29 signature. QPHRVRqLRREVAQL
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| source |
prosite : PS00579
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3)
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chain |
R |
| residue |
76-91 |
| type |
prosite |
| sequence |
KKAIVRLAEGQSIEAL
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| description |
RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAIVRLAegqsieaL
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| source |
prosite : PS00050
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