eF-site ID 2cja-B
PDB Code 2cja
Chain B

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Title Crystal structure of Methanosarcina barkeri seryl-tRNA synthetase complexed with ATP
Classification LIGASE
Compound SERYL-TRNA SYNTHETASE
Source Methanosarcina barkeri (strain Fusaro / DSM 804) (Q46AN5_METBA)
Sequence B:  GSHXKLQFNLKAYFKTSADPTPAKDAIAALFEEANSTLLT
RGAPEGQGAKVTEWKLGEDRIELTLQSGRYVRVHDAIFRL
RKQLAEALGKKYKIGIRGIEVESFIIKVPADHELRXLKVP
YIKSXENIEGGIQLELEVGEAEXKNRVPDRILTLLEEKIE
AAQYGAKAEHWNLLWQREPXEHPFKEDPTQAXXKEGWLKR
GSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREXIFP
KLVTWEVWXKSGHAKGVYPEIYYVCPPQTRDPDYWEEVAD
YYKVTHEVPTKLIKEKIAEPIGGXCYAQCPPFWXYVAGET
LPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIV
WIGTKEEVLKCAEELHDRYXHIFNDILDIEWRKARVNTVG
TTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQS
GDELWSGCSGVGLERWAAVFLAQKGLDPANWPEEFRNRVG
EXPKGIRFL
Description (1)  SERYL-TRNA SYNTHETASE (E.C.6.1.1.11)


Functional site

1) chain B
residue 304
type
sequence A
description BINDING SITE FOR RESIDUE ZN B1503
source : AC3

2) chain B
residue 306
type
sequence C
description BINDING SITE FOR RESIDUE ZN B1503
source : AC3

3) chain B
residue 355
type
sequence E
description BINDING SITE FOR RESIDUE ZN B1503
source : AC3

4) chain B
residue 461
type
sequence C
description BINDING SITE FOR RESIDUE ZN B1503
source : AC3

5) chain B
residue 245
type
sequence W
description BINDING SITE FOR RESIDUE CL B1504
source : AC4

6) chain B
residue 303
type
sequence Y
description BINDING SITE FOR RESIDUE CL B1504
source : AC4

7) chain B
residue 304
type
sequence A
description BINDING SITE FOR RESIDUE CL B1504
source : AC4

8) chain B
residue 305
type
sequence Q
description BINDING SITE FOR RESIDUE CL B1504
source : AC4

9) chain B
residue 336
type
sequence R
description BINDING SITE FOR RESIDUE MG B1505
source : AC5

10) chain B
residue 338
type
sequence E
description BINDING SITE FOR RESIDUE MG B1505
source : AC5

11) chain B
residue 416
type
sequence D
description BINDING SITE FOR RESIDUE MG B1506
source : AC6

12) chain B
residue 432
type
sequence E
description BINDING SITE FOR RESIDUE MG B1506
source : AC6

13) chain B
residue 435
type
sequence N
description BINDING SITE FOR RESIDUE MG B1506
source : AC6

14) chain B
residue 336
type
sequence R
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

15) chain B
residue 338
type
sequence E
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

16) chain B
residue 347
type
sequence R
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

17) chain B
residue 348
type
sequence V
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

18) chain B
residue 351
type
sequence F
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

19) chain B
residue 353
type
sequence R
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

20) chain B
residue 432
type
sequence E
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

21) chain B
residue 433
type
sequence F
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

22) chain B
residue 435
type
sequence N
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

23) chain B
residue 465
type
sequence G
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

24) chain B
residue 468
type
sequence R
description BINDING SITE FOR RESIDUE ATP B1507
source : AC8

25) chain B
residue 306
type catalytic
sequence C
description 885
source MCSA : MCSA2

26) chain B
residue 468
type catalytic
sequence R
description 885
source MCSA : MCSA2

27) chain B
residue 336
type catalytic
sequence R
description 885
source MCSA : MCSA2

28) chain B
residue 338
type catalytic
sequence E
description 885
source MCSA : MCSA2

29) chain B
residue 347
type catalytic
sequence R
description 885
source MCSA : MCSA2

30) chain B
residue 355
type catalytic
sequence E
description 885
source MCSA : MCSA2

31) chain B
residue 416
type catalytic
sequence D
description 885
source MCSA : MCSA2

32) chain B
residue 432
type catalytic
sequence E
description 885
source MCSA : MCSA2

33) chain B
residue 435
type catalytic
sequence N
description 885
source MCSA : MCSA2

34) chain B
residue 461
type catalytic
sequence C
description 885
source MCSA : MCSA2

35) chain B
residue 304
type BINDING
sequence A
description
source Swiss-Prot : SWS_FT_FI1

36) chain B
residue 306
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

37) chain B
residue 336
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI1

38) chain B
residue 338
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI1

39) chain B
residue 347
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI1

40) chain B
residue 353
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI1

41) chain B
residue 355
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI1

42) chain B
residue 416
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI1

43) chain B
residue 432
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI1

44) chain B
residue 435
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI1

45) chain B
residue 461
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI1

46) chain B
residue 468
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI1


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