eF-site ID 2cde-ABCDEF
PDB Code 2cde
Chain A, B, C, D, E, F

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Title Structure and binding kinetics of three different human CD1d-alpha- Galactosylceramide specific T cell receptors - iNKT-TCR
Classification CELL RECEPTOR
Compound INKT-TCR
Source (2CDE)
Sequence A:  NQVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTG
RGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ
LSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQKPDP
AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDK
TVLDMRSMDFKSNSAVAWSNKSDFACANAFNN
B:  EADIYQTPRYLVIGTGKKITLECSQTMGHDKMYWYQQDPG
MELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLES
ARPSHTSQYLCASSENIGTAYEQYFGPGTRLTVTEDLKNV
FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW
VNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATF
WQDPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAW
GRAD
C:  NQVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTG
RGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ
LSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQKPDP
AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDK
TVLDMRSMDFKSNSAVAWSNKSDFACANAFNN
D:  EADIYQTPRYLVIGTGKKITLECSQTMGHDKMYWYQQDPG
MELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLES
ARPSHTSQYLCASSENIGTAYEQYFGPGTRLTVTEDLKNV
FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW
VNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATF
WQDPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAW
GRAD
E:  NQVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTG
RGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ
LSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQKPDP
AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDK
TVLDMRSMDFKSNSAVAWSNKSDFACANAFNN
F:  EADIYQTPRYLVIGTGKKITLECSQTMGHDKMYWYQQDPG
MELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLES
ARPSHTSQYLCASSENIGTAYEQYFGPGTRLTVTEDLKNV
FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW
VNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATF
WQDPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAW
GRAD
Description


Functional site

1) chain B
residue 185
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498
source Swiss-Prot : SWS_FT_FI1

2) chain D
residue 185
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498
source Swiss-Prot : SWS_FT_FI1

3) chain F
residue 185
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498
source Swiss-Prot : SWS_FT_FI1


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