eF-site ID 2cch-A
PDB Code 2cch
Chain A

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Title The crystal structure of CDK2 cyclin A in complex with a substrate peptide derived from CDC modified with a gamma-linked ATP analogue
Classification CELL CYCLE
Compound CELL DIVISION PROTEIN KINASE 2
Source (CDC6_HUMAN)
Sequence A:  SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDT
ETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV
FEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH
SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY
XHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTR
RALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPS
FPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKA
ALAHPFFQDVTKPVPHL
Description


Functional site

1) chain A
residue 214
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A1298
source : AC1

2) chain A
residue 217
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A1298
source : AC1

3) chain A
residue 278
type
sequence K
description BINDING SITE FOR RESIDUE SO4 A1298
source : AC1

4) chain A
residue 10
type
sequence I
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

5) chain A
residue 11
type
sequence G
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

6) chain A
residue 12
type
sequence E
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

7) chain A
residue 15
type
sequence Y
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

8) chain A
residue 18
type
sequence V
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

9) chain A
residue 31
type
sequence A
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

10) chain A
residue 33
type
sequence K
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

11) chain A
residue 81
type
sequence E
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

12) chain A
residue 82
type
sequence F
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

13) chain A
residue 83
type
sequence L
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

14) chain A
residue 86
type
sequence D
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

15) chain A
residue 89
type
sequence K
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

16) chain A
residue 129
type
sequence K
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

17) chain A
residue 131
type
sequence Q
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

18) chain A
residue 132
type
sequence N
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

19) chain A
residue 134
type
sequence L
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

20) chain A
residue 145
type
sequence D
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

21) chain A
residue 147
type
sequence G
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

22) chain A
residue 148
type
sequence L
description BINDING SITE FOR RESIDUE ATP A1297
source : AC2

23) chain A
residue 109
type
sequence F
description BINDING SITE FOR RESIDUE GOL A1299
source : AC4

24) chain A
residue 209
type
sequence I
description BINDING SITE FOR RESIDUE GOL A1299
source : AC4

25) chain A
residue 213
type
sequence F
description BINDING SITE FOR RESIDUE GOL A1299
source : AC4

26) chain A
residue 237
type
sequence K
description BINDING SITE FOR RESIDUE GOL A1299
source : AC4

27) chain A
residue 239
type
sequence S
description BINDING SITE FOR RESIDUE GOL A1299
source : AC4

28) chain A
residue 286
type
sequence F
description BINDING SITE FOR RESIDUE GOL A1299
source : AC4

29) chain A
residue 287
type
sequence Q
description BINDING SITE FOR RESIDUE GOL A1299
source : AC4

30) chain A
residue 60
type
sequence H
description BINDING SITE FOR RESIDUE GOL A1300
source : AC5

31) chain A
residue 113
type
sequence Q
description BINDING SITE FOR RESIDUE GOL A1300
source : AC5

32) chain A
residue 116
type
sequence A
description BINDING SITE FOR RESIDUE GOL A1300
source : AC5

33) chain A
residue 117
type
sequence F
description BINDING SITE FOR RESIDUE GOL A1300
source : AC5

34) chain A
residue 242
type
sequence K
description BINDING SITE FOR RESIDUE GOL A1300
source : AC5

35) chain A
residue 243
type
sequence W
description BINDING SITE FOR RESIDUE GOL A1300
source : AC5

36) chain A
residue 14
type MOD_RES
sequence T
description Phosphothreonine => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:17095507
source Swiss-Prot : SWS_FT_FI7

37) chain A
residue 15
type MOD_RES
sequence Y
description Phosphotyrosine; by WEE1 => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:17095507, ECO:0007744|PubMed:19690332
source Swiss-Prot : SWS_FT_FI8

38) chain A
residue 19
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0007744|PubMed:19369195
source Swiss-Prot : SWS_FT_FI9

39) chain A
residue 160
type MOD_RES
sequence X
description Phosphothreonine; by CAK and CCRK => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:14597612, ECO:0000269|PubMed:16325401, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:17570665, ECO:0000269|PubMed:20147522, ECO:0000269|PubMed:20360007, ECO:0000269|PubMed:21565702, ECO:0000305|PubMed:28666995
source Swiss-Prot : SWS_FT_FI10

40) chain A
residue 132
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI3

41) chain A
residue 145
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI3

42) chain A
residue 9
type SITE
sequence K
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

43) chain A
residue 88
type SITE
sequence K
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

44) chain A
residue 166
type SITE
sequence L
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

45) chain A
residue 6
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI6

46) chain A
residue 10-33
type prosite
sequence IGEGTYGVVYKARNKLTGEVVALK
description PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. IGEGTYGVVYkArnkltgev..........VALK
source prosite : PS00107

47) chain A
residue 123-135
type prosite
sequence VLHRDLKPQNLLI
description PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. VlHrDLKpqNLLI
source prosite : PS00108

48) chain A
residue 127
type ACT_SITE
sequence D
description Proton acceptor
source Swiss-Prot : SWS_FT_FI1

49) chain A
residue 10
type BINDING
sequence I
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

50) chain A
residue 33
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

51) chain A
residue 81
type BINDING
sequence E
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

52) chain A
residue 86
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

53) chain A
residue 129
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

54) chain A
residue 1
type MOD_RES
sequence M
description N-acetylmethionine => ECO:0007744|PubMed:22814378
source Swiss-Prot : SWS_FT_FI5


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