eF-site ID 2a68-A
PDB Code 2a68
Chain A

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Title Crystal structure of the T. thermophilus RNA polymerase holoenzyme in complex with antibiotic rifabutin
Classification TRANSFERASE
Compound DNA-directed RNA polymerase alpha chain
Source ORGANISM_SCIENTIFIC: Thermus thermophilus;
Sequence A:  MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPL
RRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIIL
NLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADV
EIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKD
RINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIW
TDGSVTPLEALNQAVEILREHLTYFSNPQ
Description


Functional site

1) chain A
residue 170
type
sequence V
description BINDING SITE FOR RESIDUE MG A 9001
source : AC1

2) chain A
residue 172
type
sequence S
description BINDING SITE FOR RESIDUE MG A 9001
source : AC1

3) chain A
residue 89
type
sequence F
description BINDING SITE FOR RESIDUE MG A 9018
source : AC2

4) chain A
residue 146
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9018
source : AC2

5) chain A
residue 105
type
sequence G
description BINDING SITE FOR RESIDUE MG A 9024
source : AC3

6) chain A
residue 106
type
sequence P
description BINDING SITE FOR RESIDUE MG A 9024
source : AC3

7) chain A
residue 132
type
sequence L
description BINDING SITE FOR RESIDUE MG A 9024
source : AC3

8) chain A
residue 133
type
sequence E
description BINDING SITE FOR RESIDUE MG A 9024
source : AC3

9) chain A
residue 134
type
sequence E
description BINDING SITE FOR RESIDUE MG A 9024
source : AC3

10) chain A
residue 135
type
sequence G
description BINDING SITE FOR RESIDUE MG A 9024
source : AC3

11) chain A
residue 136
type
sequence G
description BINDING SITE FOR RESIDUE MG A 9024
source : AC3

12) chain A
residue 227
type
sequence N
description BINDING SITE FOR RESIDUE MG A 9062
source : AC5

13) chain A
residue 208
type
sequence L
description BINDING SITE FOR RESIDUE MG A 9097
source : AC6

14) chain A
residue 176
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9102
source : AC7

15) chain A
residue 176
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9107
source : AC8

16) chain A
residue 213
type
sequence Q
description BINDING SITE FOR RESIDUE MG A 9109
source : AC9

17) chain A
residue 229
type
sequence Q
description BINDING SITE FOR RESIDUE MG A 9126
source : BC3

18) chain A
residue 66
type
sequence S
description BINDING SITE FOR RESIDUE MG A 9139
source : BC4

19) chain A
residue 67
type
sequence T
description BINDING SITE FOR RESIDUE MG A 9139
source : BC4

20) chain A
residue 16
type
sequence Q
description BINDING SITE FOR RESIDUE MG A 9173
source : BC7

21) chain A
residue 176
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9178
source : BC8

22) chain A
residue 200
type
sequence W
description BINDING SITE FOR RESIDUE MG A 9178
source : BC8

23) chain A
residue 186
type
sequence L
description BINDING SITE FOR RESIDUE MG A 9200
source : CC1

24) chain A
residue 80
type
sequence L
description BINDING SITE FOR RESIDUE MG A 9411
source : CC3

25) chain A
residue 83
type
sequence K
description BINDING SITE FOR RESIDUE MG A 9411
source : CC3

26) chain A
residue 84
type
sequence E
description BINDING SITE FOR RESIDUE MG A 9411
source : CC3

27) chain A
residue 137
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9413
source : CC5

28) chain A
residue 20
type
sequence Y
description BINDING SITE FOR RESIDUE MG C 9007
source : FC4

29) chain A
residue 22
type
sequence E
description BINDING SITE FOR RESIDUE MG C 9007
source : FC4

30) chain A
residue 122
type
sequence I
description BINDING SITE FOR RESIDUE MG D 9069
source : PC7


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