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eF-site ID
|
1zyr-C |
PDB Code
|
1zyr |
Chain
|
C |
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click to enlarge
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Title
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Structure of Thermus thermophilus RNA polymerase holoenzyme in complex with the antibiotic streptolydigin |
Classification
|
TRANSCRIPTION,TRANSFERASE |
Compound
|
DNA-directed RNA polymerase alpha chain |
Source
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ORGANISM_SCIENTIFIC: Thermus thermophilus; |
|
Sequence
|
C: |
MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRE
NVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQ
DECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPL
MTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIA
SIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVL
GYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFT
LLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEK
LGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGH
EVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERML
MGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNP
LSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICP
VETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVT
DEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGE
PVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALM
GSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEED
GEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQR
PRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFD
GYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPE
RITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTS
FKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIV
VRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLA
NRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRM
NLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQ
AFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPE
EQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHM
VEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPS
VPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR
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Description
|
|
Functional site
|
|
1)
|
chain |
C |
residue |
422 |
type |
|
sequence |
R
|
description |
BINDING SITE FOR RESIDUE STD D 1525
|
source |
: AC1
|
|
2)
|
chain |
C |
residue |
423 |
type |
|
sequence |
A
|
description |
BINDING SITE FOR RESIDUE STD D 1525
|
source |
: AC1
|
|
3)
|
chain |
C |
residue |
425 |
type |
|
sequence |
F
|
description |
BINDING SITE FOR RESIDUE STD D 1525
|
source |
: AC1
|
|
4)
|
chain |
C |
residue |
428 |
type |
|
sequence |
R
|
description |
BINDING SITE FOR RESIDUE STD D 1525
|
source |
: AC1
|
|
5)
|
chain |
C |
residue |
836-848 |
type |
prosite |
sequence |
GDKLANRHGNKGV
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
|
source |
prosite : PS01166
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