eF-site ID 1zt4-ABCD PDB Code 1zt4 Chain A, B, C, D click to enlarge Title The crystal structure of human CD1d with and without alpha-Galactosylceramide Classification IMMUNE SYSTEM Compound T-cell surface glycoprotein CD1d Source (B2MG_HUMAN) Sequence A:  RLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSD TVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFA KMLRLSYPLELQVSAGCEVHPGNASNNFFHVAFQGKDILS FQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGT CPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLV CHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETWYL RATLDVVAGEAAGLSCRVKHSSLEGQDIVLYW B:  MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDL LKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA CRVNHVTLSQPKIVKWDRDM C:  PQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSND SDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKE FAKMLRLSYPLELQVSAGCEVHPGNASNNFFHVAFQGKDI LSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLN GTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLL LVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETW YLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSY D:  MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDL LKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA CRVNHVTLSQPKIVKWDRDM Description Functional site 1) chain A residue 12 type sequence C description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 2) chain A residue 14 type sequence Q description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 3) chain A residue 66 type sequence L description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 4) chain A residue 73 type sequence Y description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 5) chain A residue 76 type sequence S description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 6) chain A residue 77 type sequence F description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 7) chain A residue 80 type sequence D description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 8) chain A residue 84 type sequence F description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 9) chain A residue 90 type sequence L description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 10) chain A residue 116 type sequence V description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 11) chain A residue 118 type sequence F description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 12) chain A residue 151 type sequence D description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 13) chain A residue 153 type sequence W description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 14) chain A residue 154 type sequence T description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 15) chain A residue 169 type sequence F description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 16) chain C residue 127 type sequence Q description BINDING SITE FOR RESIDUE AGH A 282 source : AC1 17) chain B residue 78-84 type prosite sequence YACRVNH description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVNH source prosite : PS00290 18) chain B residue 2 type MOD_RES sequence Q description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 19) chain D residue 2 type MOD_RES sequence Q description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 20) chain C residue 80 type MOD_RES sequence D description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 21) chain C residue 151 type MOD_RES sequence D description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280 source Swiss-Prot : SWS_FT_FI1 22) chain B residue 1 type CARBOHYD sequence I description N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI2 23) chain D residue 1 type CARBOHYD sequence I description N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI2 24) chain B residue 19 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 25) chain D residue 58 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 26) chain D residue 91 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 27) chain D residue 94 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 28) chain B residue 41 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 29) chain B residue 48 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 30) chain B residue 58 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 31) chain B residue 91 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 32) chain B residue 94 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 33) chain D residue 19 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 34) chain D residue 41 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 35) chain D residue 48 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443 source Swiss-Prot : SWS_FT_FI3 36) chain A residue 108 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000255 source Swiss-Prot : SWS_FT_FI4 37) chain A residue 163 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000255 source Swiss-Prot : SWS_FT_FI4 38) chain C residue 108 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000255 source Swiss-Prot : SWS_FT_FI4 39) chain C residue 163 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000255 source Swiss-Prot : SWS_FT_FI4

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