eF-site ID 1zm7-ABCD
PDB Code 1zm7
Chain A, B, C, D

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Title Crystal structure of D. melanogaster deoxyribonucleoside kinase mutant N64D in complex with dTTP
Classification TRANSFERASE
Compound Deoxynucleoside kinase
Source Drosophila melanogaster (Fruit fly) (DNK_DROME)
Sequence A:  TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLT
EPVEKWRNVNGVDLLELMYKDPKKWAMPFQSYVTLTMLQS
HTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNT
LEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE
ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD
B:  TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLT
EPVEKWRNVNGVDLLELMYKDPKKWAMPFQSYVTLTMLQS
HTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNT
LEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE
ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADL
C:  TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLT
EPVEKWRNVNGVDLLELMYKDPKKWAMPFQSYVTLTMLQS
HTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNT
LEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE
ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADL
D:  TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLT
EPVEKWRNVNGVDLLELMYKDPKKWAMPFQSYVTLTMLQS
HTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNT
LEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE
ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD
Description


Functional site

1) chain D
residue 34
type
sequence T
description BINDING SITE FOR RESIDUE MG D 400
source : AC1

2) chain D
residue 52
type
sequence E
description BINDING SITE FOR RESIDUE MG D 400
source : AC1

3) chain D
residue 104
type
sequence E
description BINDING SITE FOR RESIDUE MG D 400
source : AC1

4) chain D
residue 169
type
sequence R
description BINDING SITE FOR RESIDUE MG D 400
source : AC1

5) chain A
residue 29
type
sequence I
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

6) chain A
residue 30
type
sequence G
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

7) chain A
residue 31
type
sequence S
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

8) chain A
residue 32
type
sequence G
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

9) chain A
residue 33
type
sequence K
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

10) chain A
residue 34
type
sequence T
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

11) chain A
residue 52
type
sequence E
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

12) chain A
residue 57
type
sequence W
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

13) chain A
residue 66
type
sequence L
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

14) chain A
residue 69
type
sequence M
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

15) chain A
residue 70
type
sequence Y
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

16) chain A
residue 80
type
sequence F
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

17) chain A
residue 81
type
sequence Q
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

18) chain A
residue 84
type
sequence V
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

19) chain A
residue 104
type
sequence E
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

20) chain A
residue 105
type
sequence R
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

21) chain A
residue 110
type
sequence A
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

22) chain A
residue 114
type
sequence F
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

23) chain A
residue 118
type
sequence M
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

24) chain A
residue 167
type
sequence R
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

25) chain A
residue 169
type
sequence R
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

26) chain A
residue 172
type
sequence E
description BINDING SITE FOR RESIDUE TTP A 300
source : AC2

27) chain B
residue 28
type
sequence N
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

28) chain B
residue 29
type
sequence I
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

29) chain B
residue 30
type
sequence G
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

30) chain B
residue 31
type
sequence S
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

31) chain B
residue 32
type
sequence G
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

32) chain B
residue 33
type
sequence K
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

33) chain B
residue 34
type
sequence T
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

34) chain B
residue 52
type
sequence E
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

35) chain B
residue 57
type
sequence W
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

36) chain B
residue 69
type
sequence M
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

37) chain B
residue 70
type
sequence Y
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

38) chain B
residue 80
type
sequence F
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

39) chain B
residue 81
type
sequence Q
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

40) chain B
residue 84
type
sequence V
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

41) chain B
residue 104
type
sequence E
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

42) chain B
residue 105
type
sequence R
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

43) chain B
residue 110
type
sequence A
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

44) chain B
residue 114
type
sequence F
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

45) chain B
residue 167
type
sequence R
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

46) chain B
residue 169
type
sequence R
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

47) chain B
residue 172
type
sequence E
description BINDING SITE FOR RESIDUE TTP B 301
source : AC3

48) chain C
residue 29
type
sequence I
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

49) chain C
residue 30
type
sequence G
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

50) chain C
residue 31
type
sequence S
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

51) chain C
residue 32
type
sequence G
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

52) chain C
residue 33
type
sequence K
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

53) chain C
residue 34
type
sequence T
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

54) chain C
residue 52
type
sequence E
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

55) chain C
residue 57
type
sequence W
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

56) chain C
residue 69
type
sequence M
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

57) chain C
residue 70
type
sequence Y
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

58) chain C
residue 80
type
sequence F
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

59) chain C
residue 81
type
sequence Q
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

60) chain C
residue 84
type
sequence V
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

61) chain C
residue 104
type
sequence E
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

62) chain C
residue 105
type
sequence R
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

63) chain C
residue 110
type
sequence A
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

64) chain C
residue 114
type
sequence F
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

65) chain C
residue 118
type
sequence M
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

66) chain C
residue 167
type
sequence R
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

67) chain C
residue 169
type
sequence R
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

68) chain C
residue 172
type
sequence E
description BINDING SITE FOR RESIDUE TTP C 302
source : AC4

69) chain D
residue 29
type
sequence I
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

70) chain D
residue 30
type
sequence G
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

71) chain D
residue 31
type
sequence S
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

72) chain D
residue 32
type
sequence G
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

73) chain D
residue 33
type
sequence K
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

74) chain D
residue 34
type
sequence T
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

75) chain D
residue 52
type
sequence E
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

76) chain D
residue 57
type
sequence W
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

77) chain D
residue 66
type
sequence L
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

78) chain D
residue 69
type
sequence M
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

79) chain D
residue 70
type
sequence Y
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

80) chain D
residue 80
type
sequence F
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

81) chain D
residue 81
type
sequence Q
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

82) chain D
residue 84
type
sequence V
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

83) chain D
residue 104
type
sequence E
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

84) chain D
residue 105
type
sequence R
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

85) chain D
residue 110
type
sequence A
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

86) chain D
residue 114
type
sequence F
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

87) chain D
residue 118
type
sequence M
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

88) chain D
residue 167
type
sequence R
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

89) chain D
residue 169
type
sequence R
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

90) chain D
residue 172
type
sequence E
description BINDING SITE FOR RESIDUE TTP D 303
source : AC5

91) chain A
residue 104
type ACT_SITE
sequence E
description Proton acceptor => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

92) chain B
residue 104
type ACT_SITE
sequence E
description Proton acceptor => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

93) chain C
residue 104
type ACT_SITE
sequence E
description Proton acceptor => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

94) chain D
residue 104
type ACT_SITE
sequence E
description Proton acceptor => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

95) chain A
residue 27
type BINDING
sequence G
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI2

96) chain B
residue 27
type BINDING
sequence G
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI2

97) chain C
residue 27
type BINDING
sequence G
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI2

98) chain D
residue 27
type BINDING
sequence G
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI2

99) chain A
residue 52
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

100) chain B
residue 172
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

101) chain C
residue 52
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

102) chain C
residue 70
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI3

103) chain C
residue 81
type BINDING
sequence Q
description
source Swiss-Prot : SWS_FT_FI3

104) chain C
residue 105
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI3

105) chain C
residue 172
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

106) chain D
residue 52
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

107) chain D
residue 70
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI3

108) chain D
residue 81
type BINDING
sequence Q
description
source Swiss-Prot : SWS_FT_FI3

109) chain D
residue 105
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI3

110) chain A
residue 70
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI3

111) chain D
residue 172
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

112) chain A
residue 81
type BINDING
sequence Q
description
source Swiss-Prot : SWS_FT_FI3

113) chain A
residue 105
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI3

114) chain A
residue 172
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

115) chain B
residue 52
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI3

116) chain B
residue 70
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI3

117) chain B
residue 81
type BINDING
sequence Q
description
source Swiss-Prot : SWS_FT_FI3

118) chain B
residue 105
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI3


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