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eF-site ID
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1zla-ABCDEFGHK |
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PDB Code
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1zla |
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Chain
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A, B, C, D, E, F, G, H, K |
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click to enlarge
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Title
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X-ray Structure of a Kaposi's sarcoma herpesvirus LANA peptide bound to the nucleosomal core |
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Classification
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STRUCTURAL PROTEIN/DNA |
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Compound
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Palindromic 146bp Human alpha-Satellite DNA fragment |
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Source
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(1ZLA) |
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Sequence
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A: |
PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQD
FKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV
HIMPKDIQLARRIRGERA
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| B: |
DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE
NVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
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| C: |
AKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAA
VLEYLTAEILELAGNWERDNKKTRIIPRHLQLAVRNDEEL
NKLLGRVTIAQGGVLPNIQSVLLPKKT
|
| D: |
RKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFER
IAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS
EGTKAVTKYTSAK
|
| E: |
PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQD
FKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV
HIMPKDIQLARRIRGERA
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| F: |
RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVL
KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY
GFGG
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| G: |
AKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAA
VLEYLTAEILELAGNWERDNKKTRIIPRHLQLAVRNDEEL
NKLLGRVTIAQGGVLPNIQSVLLPKK
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| H: |
RKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFER
IAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS
EGTKAVTKYTSAK
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| K: |
PGMRLRSGRSTGAP
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Description
|
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Functional site
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1)
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chain |
D |
| residue |
1289-1311 |
| type |
prosite |
| sequence |
REIQTAVRLLLPGELAKHAVSEG
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| description |
HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
|
| source |
prosite : PS00357
|
|
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2)
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chain |
C |
| residue |
821-827 |
| type |
prosite |
| sequence |
AGLQFPV
|
| description |
HISTONE_H2A Histone H2A signature. AGLqFPV
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| source |
prosite : PS00046
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3)
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chain |
A |
| residue |
466-474 |
| type |
prosite |
| sequence |
PFQRLVREI
|
| description |
HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
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| source |
prosite : PS00959
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