eF-site ID 1ynn-D PDB Code 1ynn Chain D click to enlarge Title Taq RNA polymerase-rifampicin complex Classification TRANSFERASE Compound DNA-directed RNA polymerase alpha chain Source ORGANISM_SCIENTIFIC: Thermus aquaticus; Sequence D:  KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERD GLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTR SIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATE LEQVLYFNKYIVLDPKGAVLDGVPVEKRQLLTDEEYRELR YGKQETYPLPAGVDALVKDGEEVVKGQELAPGVVSRMDGV ALYRFPRRVRVDYLRKERAALRIPLSAWVEKEAYRPGEVL AELSEPYLFRAEESGVVELKDLAEGHLIYLRQEEEVVARY FLPAGMTPLVVEGEIVEVGQPLAEGKGLLRLPRHMTAKEV EAEEEGDSVHLTLFLEWTEPKDYKVAPHMNVIVPEGAKVQ AGEKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYP FEDDVEVTTGDRVAPGDVLADGGKVKSEIYGRVEVDLVRN VVRVVESYDIDARMGAEAIQELLKELDLEKLERELLEEMK HPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPP DLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGA PEIIIRNEKRMLQEAVDAVIDNGRRGSPVTNPGSERPLRS LTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQC GLPKRMALELFKPFLLKKMEEKAFAPNVKAARRMLERQRD IKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVE GQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQ MLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGA GMAFATPEEALAAYERGEVALNAPIVVAGRETSVGRLKFV FANPDEALLAVAHGLLDLQDVVTVRYLGRRLETSPGRILF ARIVGEAVGDEKVAQELIQMDVPQEKNSLKDLVYQAFLRL GMEKTARLLDALKYYGFTLSTTSGITIGIDDAVIPEEKQR YLEEADRKLRQIEQAYEMGFLTDRERYDQVIQLWTETTEK VTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMR GLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGA DTALRTADSGYLTRKLVDVAHEIVVREADCGTTNYISVPL FQMDEVTRTLRLRKRSDIESGLYGRVLAREVEALGRRLEE GRYLSLEDVHFLIKAAEAGEVREVPVRSPLTCQTRYGVCQ KCYGYDLSMARPVSIGEAVGVVAAESIGEPGTQLTMRT Description Functional site 1) chain D residue 58 type sequence C description BINDING SITE FOR RESIDUE ZN D 1525 source : AC1 2) chain D residue 59 type sequence A description BINDING SITE FOR RESIDUE ZN D 1525 source : AC1 3) chain D residue 60 type sequence C description BINDING SITE FOR RESIDUE ZN D 1525 source : AC1 4) chain D residue 76 type sequence C description BINDING SITE FOR RESIDUE ZN D 1525 source : AC1 5) chain D residue 1112 type sequence C description BINDING SITE FOR RESIDUE ZN D 1526 source : AC2 6) chain D residue 1194 type sequence C description BINDING SITE FOR RESIDUE ZN D 1526 source : AC2 7) chain D residue 1201 type sequence C description BINDING SITE FOR RESIDUE ZN D 1526 source : AC2 8) chain D residue 1204 type sequence C description BINDING SITE FOR RESIDUE ZN D 1526 source : AC2 9) chain D residue 58 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 10) chain D residue 1201 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 11) chain D residue 1204 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 12) chain D residue 60 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 13) chain D residue 73 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 14) chain D residue 76 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 15) chain D residue 739 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 16) chain D residue 741 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 17) chain D residue 743 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 18) chain D residue 1112 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 19) chain D residue 1194 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1

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