eF-site ID 1ynj-C
PDB Code 1ynj
Chain C

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Title Taq RNA polymerase-Sorangicin complex
Classification TRANSFERASE
Compound DNA-directed RNA polymerase alpha chain
Source ORGANISM_SCIENTIFIC: Thermus aquaticus;
Sequence C:  MEIKRFGRIREVIPLPPLTEIQVESYKKALQADVPPEKRE
NVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIGDPPFSQ
DECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHLPL
MTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIA
SIIPLPKRGPWIDLEVEASGVVTMKVNKRKFPLVLLLRVL
GYDQETLVRELSAYGDLVQGLLDEAVLAMRPEEAMVRLFT
LLRPGDPPKKDKALAYLFGLLADPKRYDLGEAGRYKAEEK
LGVGLSGRTLVRFEDGEFKDEVFLPTLRYLFALTAGVPGH
EVDDIDHLGNRRIRTVGELMADQFRVGLARLARGVRERMV
MGSPDTLTPAKLVNSRPLEAALREFFSRSQLSQFKDETNP
LSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICP
VETPEGANIGLITSLAAYARVDALGFIRTPYRRVKNGVVT
EEVVYMTASEEDRYTIAQANTPLEGDRIATDRVVARRRGE
PVIVAPEEVEFMDVSPKQVFSLNTNLIPFLEHDDANRALM
GSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEED
GEVVKVDGTRIAVRYEDGRLVEHPLRRYARSNQGTAFDQR
PRVRVGQRVKKGDLLADGPASEEGFLALGQNVLVAIMPFD
GYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPE
RITRDIPHLSEAALRDLDEEGIVRIGAEVKPGDILVGRTS
FKGEQEPSPEERLLRSIFGEKARDVKDTSLRVPPGEGGIV
VGRLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLA
NRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRM
NLGQILETHLGLAGYFLGQRYISPVFDGATEPEIKELLAE
AFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSPE
EQLKELFDLGKVVLYDGRTGEPFEGPIVVGQMFIMKLYHM
VEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAHTLQEMLTIKSDDIEGRNAAYQAIIKGEDVPEPS
VPESFRVLVKELQALALDVQTLDEKDNPVDIFEG
Description


Functional site

1) chain C
residue 137
type
sequence V
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

2) chain C
residue 390
type
sequence Q
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

3) chain C
residue 393
type
sequence Q
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

4) chain C
residue 394
type
sequence F
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

5) chain C
residue 396
type
sequence D
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

6) chain C
residue 405
type
sequence R
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

7) chain C
residue 406
type
sequence H
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

8) chain C
residue 409
type
sequence R
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

9) chain C
residue 411
type
sequence S
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

10) chain C
residue 444
type
sequence P
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

11) chain C
residue 452
type
sequence I
description BINDING SITE FOR RESIDUE SRN C 1120
source : AC1

12) chain C
residue 836-848
type prosite
sequence GDKLANRHGNKGV
description RNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
source prosite : PS01166


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