eF-site ID 1yn6-A
PDB Code 1yn6
Chain A

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Title Crystal structure of a mouse MHC class I protein, H2-Db, in complex with a peptide from the influenza A acid polymerase
Classification IMMUNE SYSTEM
Compound H-2 class I histocompatibility antigen, D-B alpha chain
Source Mus musculus (Mouse) (RRP2_IAZI1)
Sequence A:  PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAE
NPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNL
LGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGR
DYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLE
GECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTL
RCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF
QKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRW
Description (1)  H-2 class I histocompatibility antigen, D-B alpha chain, Beta-2-microglobulin, 10-mer peptide from RNA-directed RNA polymerase subunit P2 (E.C.2.7.7.48)


Functional site

1) chain A
residue 176
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000305
source Swiss-Prot : SWS_FT_FI2

2) chain A
residue 256
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:3980466
source Swiss-Prot : SWS_FT_FI3

3) chain A
residue 86
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:3980466, ECO:0000269|PubMed:7118212
source Swiss-Prot : SWS_FT_FI1

4) chain A
residue 257-263
type prosite
sequence YTCRVYH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVKH
source prosite : PS00290


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