eF-site ID 1yls-ABCD PDB Code 1yls Chain A, B, C, D click to enlarge Title Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene Classification RNA Compound RNA Diels-Alder ribozyme Source (1YLS) Sequence A:  GGAGCXCGCXC B:  GGGXGAGGXCGUGCCGGCXCUXCGGAGCAAUACUCGGC C:  GGAGCXCGCXC D:  GGGXGAGGXCGUGCCGGCXCUXCGGAGCAAUACUCGGC Description Functional site 1) chain B residue 234 type sequence U description BINDING SITE FOR RESIDUE MG B 240 source : AC1 2) chain B residue 233 type sequence C description BINDING SITE FOR RESIDUE MG B 241 source : AC2 3) chain B residue 215 type sequence C description BINDING SITE FOR RESIDUE MG B 242 source : AC3 4) chain B residue 206 type sequence A description BINDING SITE FOR RESIDUE MG B 245 source : AC6 5) chain B residue 213 type sequence G description BINDING SITE FOR RESIDUE MG B 246 source : AC7 6) chain D residue 213 type sequence G description BINDING SITE FOR RESIDUE MG B 246 source : AC7 7) chain D residue 234 type sequence U description BINDING SITE FOR RESIDUE MG D 340 source : AC9 8) chain D residue 233 type sequence C description BINDING SITE FOR RESIDUE MG D 341 source : BC1 9) chain D residue 215 type sequence C description BINDING SITE FOR RESIDUE MG D 342 source : BC2 10) chain D residue 217 type sequence G description BINDING SITE FOR RESIDUE MG D 342 source : BC2 11) chain A residue 102 type sequence G description BINDING SITE FOR RESIDUE DAI A 100 source : BC5 12) chain A residue 103 type sequence A description BINDING SITE FOR RESIDUE DAI A 100 source : BC5 13) chain B residue 213 type sequence G description BINDING SITE FOR RESIDUE DAI A 100 source : BC5 14) chain B residue 214 type sequence C description BINDING SITE FOR RESIDUE DAI A 100 source : BC5 15) chain B residue 231 type sequence U description BINDING SITE FOR RESIDUE DAI A 100 source : BC5 16) chain B residue 232 type sequence A description BINDING SITE FOR RESIDUE DAI A 100 source : BC5 17) chain B residue 234 type sequence U description BINDING SITE FOR RESIDUE DAI A 100 source : BC5 18) chain C residue 102 type sequence G description BINDING SITE FOR RESIDUE DAI C 100 source : BC6 19) chain C residue 103 type sequence A description BINDING SITE FOR RESIDUE DAI C 100 source : BC6 20) chain D residue 213 type sequence G description BINDING SITE FOR RESIDUE DAI C 100 source : BC6 21) chain D residue 214 type sequence C description BINDING SITE FOR RESIDUE DAI C 100 source : BC6 22) chain D residue 231 type sequence U description BINDING SITE FOR RESIDUE DAI C 100 source : BC6 23) chain D residue 232 type sequence A description BINDING SITE FOR RESIDUE DAI C 100 source : BC6 24) chain D residue 234 type sequence U description BINDING SITE FOR RESIDUE DAI C 100 source : BC6

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