eF-site ID 1ykv-ABCD PDB Code 1ykv Chain A, B, C, D click to enlarge Title Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene Classification RNA Compound Diels-Alder ribozyme Source (1YKV) Sequence A:  GGAGCUCGCCC B:  GGGCGAGGCCGUGCCAGCUCUUCGGAGCAAUACUCGGC C:  GGAGCUCGCCC D:  GGGCGAGGCCGUGCCAGCUCUUCGGAGCAAUACUCGGC Description Functional site 1) chain B residue 234 type sequence U description BINDING SITE FOR RESIDUE MG B 240 source : AC1 2) chain B residue 233 type sequence C description BINDING SITE FOR RESIDUE MG B 241 source : AC2 3) chain B residue 216 type sequence A description BINDING SITE FOR RESIDUE MG B 242 source : AC3 4) chain B residue 217 type sequence G description BINDING SITE FOR RESIDUE MG B 242 source : AC3 5) chain B residue 213 type sequence G description BINDING SITE FOR RESIDUE MG B 246 source : AC4 6) chain D residue 213 type sequence G description BINDING SITE FOR RESIDUE MG B 246 source : AC4 7) chain D residue 234 type sequence U description BINDING SITE FOR RESIDUE MG D 340 source : AC5 8) chain D residue 210 type sequence C description BINDING SITE FOR RESIDUE MG D 341 source : AC6 9) chain D residue 233 type sequence C description BINDING SITE FOR RESIDUE MG D 341 source : AC6 10) chain D residue 216 type sequence A description BINDING SITE FOR RESIDUE MG D 342 source : AC7 11) chain D residue 217 type sequence G description BINDING SITE FOR RESIDUE MG D 342 source : AC7 12) chain A residue 102 type sequence G description BINDING SITE FOR RESIDUE DAI A 100 source : AC8 13) chain A residue 103 type sequence A description BINDING SITE FOR RESIDUE DAI A 100 source : AC8 14) chain B residue 213 type sequence G description BINDING SITE FOR RESIDUE DAI A 100 source : AC8 15) chain B residue 214 type sequence C description BINDING SITE FOR RESIDUE DAI A 100 source : AC8 16) chain B residue 231 type sequence U description BINDING SITE FOR RESIDUE DAI A 100 source : AC8 17) chain B residue 232 type sequence A description BINDING SITE FOR RESIDUE DAI A 100 source : AC8 18) chain B residue 234 type sequence U description BINDING SITE FOR RESIDUE DAI A 100 source : AC8 19) chain B residue 212 type sequence U description BINDING SITE FOR RESIDUE DAI C 100 source : AC9 20) chain C residue 102 type sequence G description BINDING SITE FOR RESIDUE DAI C 100 source : AC9 21) chain C residue 103 type sequence A description BINDING SITE FOR RESIDUE DAI C 100 source : AC9 22) chain D residue 213 type sequence G description BINDING SITE FOR RESIDUE DAI C 100 source : AC9 23) chain D residue 214 type sequence C description BINDING SITE FOR RESIDUE DAI C 100 source : AC9 24) chain D residue 231 type sequence U description BINDING SITE FOR RESIDUE DAI C 100 source : AC9 25) chain D residue 232 type sequence A description BINDING SITE FOR RESIDUE DAI C 100 source : AC9 26) chain D residue 234 type sequence U description BINDING SITE FOR RESIDUE DAI C 100 source : AC9

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