eF-site ID
|
1yko-ABCDEFGHIJKL |
PDB Code
|
1yko |
Chain
|
A, B, C, D, E, F, G, H, I, J, K, L |
|
click to enlarge
|
|
Title
|
Protocatechuate 3,4-Dioxygenase Y408H mutant |
Classification
|
OXIDOREDUCTASE |
Compound
|
Protocatechuate 3,4-dioxygenase alpha chain |
Source
|
Pseudomonas putida (Arthrobacter siderocapsulatus) (PCXB_PSEPU) |
|
Sequence
|
A: |
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLA
KPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQ
DAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGV
PMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNL
IEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
|
B: |
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIP
QSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIV
AGRVVDQYGKPVPNTLVEMWQANAGGRHRHKNDRYLAPLD
PNFGGVGRXLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAH
IHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEA
VQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC
|
C: |
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLA
KPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQ
DAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGV
PMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNL
IEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
|
D: |
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIP
QSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIV
AGRVVDQYGKPVPNTLVEMWQANAGGRHRHKNDRYLAPLD
PNFGGVGRXLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAH
IHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEA
VQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC
|
E: |
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLA
KPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQ
DAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGV
PMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNL
IEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
|
F: |
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIP
QSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIV
AGRVVDQYGKPVPNTLVEMWQANAGGRHRHKNDRYLAPLD
PNFGGVGRXLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAH
IHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEA
VQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC
|
G: |
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLA
KPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQ
DAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGV
PMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNL
IEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
|
H: |
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIP
QSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIV
AGRVVDQYGKPVPNTLVEMWQANAGGRHRHKNDRYLAPLD
PNFGGVGRXLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAH
IHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEA
VQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC
|
I: |
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLA
KPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQ
DAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGV
PMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNL
IEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
|
J: |
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIP
QSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIV
AGRVVDQYGKPVPNTLVEMWQANAGGRHRHKNDRYLAPLD
PNFGGVGRXLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAH
IHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEA
VQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC
|
K: |
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLA
KPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQ
DAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGV
PMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNL
IEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
|
L: |
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIP
QSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIV
AGRVVDQYGKPVPNTLVEMWQANAGGRHRHKNDRYLAPLD
PNFGGVGRXLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAH
IHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEA
VQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC
|
|
Description
|
|
|
|
1)
|
chain |
B |
residue |
447 |
type |
|
sequence |
Y
|
description |
BINDING SITE FOR RESIDUE FE B 600
|
source |
: AC1
|
|
2)
|
chain |
B |
residue |
460 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE B 600
|
source |
: AC1
|
|
3)
|
chain |
B |
residue |
462 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE B 600
|
source |
: AC1
|
|
4)
|
chain |
D |
residue |
447 |
type |
|
sequence |
Y
|
description |
BINDING SITE FOR RESIDUE FE D 600
|
source |
: AC2
|
|
5)
|
chain |
D |
residue |
460 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE D 600
|
source |
: AC2
|
|
6)
|
chain |
D |
residue |
462 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE D 600
|
source |
: AC2
|
|
7)
|
chain |
F |
residue |
447 |
type |
|
sequence |
Y
|
description |
BINDING SITE FOR RESIDUE FE F 600
|
source |
: AC3
|
|
8)
|
chain |
F |
residue |
460 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE F 600
|
source |
: AC3
|
|
9)
|
chain |
F |
residue |
462 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE F 600
|
source |
: AC3
|
|
10)
|
chain |
H |
residue |
447 |
type |
|
sequence |
Y
|
description |
BINDING SITE FOR RESIDUE FE H 600
|
source |
: AC4
|
|
11)
|
chain |
H |
residue |
460 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE H 600
|
source |
: AC4
|
|
12)
|
chain |
H |
residue |
462 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE H 600
|
source |
: AC4
|
|
13)
|
chain |
J |
residue |
447 |
type |
|
sequence |
Y
|
description |
BINDING SITE FOR RESIDUE FE J 600
|
source |
: AC5
|
|
14)
|
chain |
J |
residue |
460 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE J 600
|
source |
: AC5
|
|
15)
|
chain |
J |
residue |
462 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE J 600
|
source |
: AC5
|
|
16)
|
chain |
L |
residue |
447 |
type |
|
sequence |
Y
|
description |
BINDING SITE FOR RESIDUE FE L 600
|
source |
: AC6
|
|
17)
|
chain |
L |
residue |
460 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE L 600
|
source |
: AC6
|
|
18)
|
chain |
L |
residue |
462 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE FE L 600
|
source |
: AC6
|
|
19)
|
chain |
B |
residue |
409 |
type |
catalytic |
sequence |
R
|
description |
936
|
source |
MCSA : MCSA1
|
|
20)
|
chain |
B |
residue |
448 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA1
|
|
21)
|
chain |
B |
residue |
458 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA1
|
|
22)
|
chain |
B |
residue |
461 |
type |
catalytic |
sequence |
I
|
description |
936
|
source |
MCSA : MCSA1
|
|
23)
|
chain |
B |
residue |
463 |
type |
catalytic |
sequence |
F
|
description |
936
|
source |
MCSA : MCSA1
|
|
24)
|
chain |
D |
residue |
409 |
type |
catalytic |
sequence |
R
|
description |
936
|
source |
MCSA : MCSA2
|
|
25)
|
chain |
D |
residue |
448 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA2
|
|
26)
|
chain |
D |
residue |
458 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA2
|
|
27)
|
chain |
D |
residue |
461 |
type |
catalytic |
sequence |
I
|
description |
936
|
source |
MCSA : MCSA2
|
|
28)
|
chain |
D |
residue |
463 |
type |
catalytic |
sequence |
F
|
description |
936
|
source |
MCSA : MCSA2
|
|
29)
|
chain |
F |
residue |
409 |
type |
catalytic |
sequence |
R
|
description |
936
|
source |
MCSA : MCSA3
|
|
30)
|
chain |
F |
residue |
448 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA3
|
|
31)
|
chain |
F |
residue |
458 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA3
|
|
32)
|
chain |
F |
residue |
461 |
type |
catalytic |
sequence |
I
|
description |
936
|
source |
MCSA : MCSA3
|
|
33)
|
chain |
F |
residue |
463 |
type |
catalytic |
sequence |
F
|
description |
936
|
source |
MCSA : MCSA3
|
|
34)
|
chain |
H |
residue |
409 |
type |
catalytic |
sequence |
R
|
description |
936
|
source |
MCSA : MCSA4
|
|
35)
|
chain |
H |
residue |
448 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA4
|
|
36)
|
chain |
H |
residue |
458 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA4
|
|
37)
|
chain |
H |
residue |
461 |
type |
catalytic |
sequence |
I
|
description |
936
|
source |
MCSA : MCSA4
|
|
38)
|
chain |
H |
residue |
463 |
type |
catalytic |
sequence |
F
|
description |
936
|
source |
MCSA : MCSA4
|
|
39)
|
chain |
J |
residue |
409 |
type |
catalytic |
sequence |
R
|
description |
936
|
source |
MCSA : MCSA5
|
|
40)
|
chain |
J |
residue |
448 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA5
|
|
41)
|
chain |
J |
residue |
458 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA5
|
|
42)
|
chain |
J |
residue |
461 |
type |
catalytic |
sequence |
I
|
description |
936
|
source |
MCSA : MCSA5
|
|
43)
|
chain |
J |
residue |
463 |
type |
catalytic |
sequence |
F
|
description |
936
|
source |
MCSA : MCSA5
|
|
44)
|
chain |
L |
residue |
409 |
type |
catalytic |
sequence |
R
|
description |
936
|
source |
MCSA : MCSA6
|
|
45)
|
chain |
L |
residue |
448 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA6
|
|
46)
|
chain |
L |
residue |
458 |
type |
catalytic |
sequence |
P
|
description |
936
|
source |
MCSA : MCSA6
|
|
47)
|
chain |
L |
residue |
461 |
type |
catalytic |
sequence |
I
|
description |
936
|
source |
MCSA : MCSA6
|
|
48)
|
chain |
L |
residue |
463 |
type |
catalytic |
sequence |
F
|
description |
936
|
source |
MCSA : MCSA6
|
|
49)
|
chain |
A |
residue |
51-79 |
type |
prosite |
sequence |
LLGQVYDGNGHLVRDSFLEVWQADANGEY
|
description |
INTRADIOL_DIOXYGENAS Intradiol ring-cleavage dioxygenases signature. LlGqVydgnGhlVrdsfLEVwqadanGeY
|
source |
prosite : PS00083
|
|
50)
|
chain |
B |
residue |
409 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
51)
|
chain |
F |
residue |
448 |
type |
BINDING |
sequence |
P
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
52)
|
chain |
F |
residue |
461 |
type |
BINDING |
sequence |
I
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
53)
|
chain |
F |
residue |
463 |
type |
BINDING |
sequence |
F
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
54)
|
chain |
H |
residue |
409 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
55)
|
chain |
H |
residue |
448 |
type |
BINDING |
sequence |
P
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
56)
|
chain |
H |
residue |
461 |
type |
BINDING |
sequence |
I
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
57)
|
chain |
H |
residue |
463 |
type |
BINDING |
sequence |
F
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
58)
|
chain |
J |
residue |
409 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
59)
|
chain |
J |
residue |
448 |
type |
BINDING |
sequence |
P
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
60)
|
chain |
J |
residue |
461 |
type |
BINDING |
sequence |
I
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
61)
|
chain |
B |
residue |
448 |
type |
BINDING |
sequence |
P
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
62)
|
chain |
J |
residue |
463 |
type |
BINDING |
sequence |
F
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
63)
|
chain |
L |
residue |
409 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
64)
|
chain |
L |
residue |
448 |
type |
BINDING |
sequence |
P
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
65)
|
chain |
L |
residue |
461 |
type |
BINDING |
sequence |
I
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
66)
|
chain |
L |
residue |
463 |
type |
BINDING |
sequence |
F
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
67)
|
chain |
B |
residue |
461 |
type |
BINDING |
sequence |
I
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
68)
|
chain |
B |
residue |
463 |
type |
BINDING |
sequence |
F
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
69)
|
chain |
D |
residue |
409 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
70)
|
chain |
D |
residue |
448 |
type |
BINDING |
sequence |
P
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
71)
|
chain |
D |
residue |
461 |
type |
BINDING |
sequence |
I
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
72)
|
chain |
D |
residue |
463 |
type |
BINDING |
sequence |
F
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
73)
|
chain |
F |
residue |
409 |
type |
BINDING |
sequence |
R
|
description |
BINDING => ECO:0000269|PubMed:7990141
|
source |
Swiss-Prot : SWS_FT_FI1
|
|