|
|
eF-site ID
|
1y69-089KU |
|
PDB Code
|
1y69 |
|
Chain
|
0, 8, 9, K, U |
|
click to enlarge
|
|
|
Title
|
RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans |
|
Classification
|
RIBOSOME |
|
Compound
|
23S ribosomal RNA |
|
Source
|
ORGANISM_SCIENTIFIC: Deinococcus radiodurans R1; |
|
|
Sequence
|
0: |
GGUCAAGAUAGUAAGGGUCCACGGUGGAUGCCCUGGCGCU
GGAGCCGAUGAAGGACGCGAUUACCUGCGAAAAGCCCCGA
CGAGCUGGAGAUACGCUUUGACUCGGGGAUGUCCGAAUGG
GGAAACCCACCUCGUAAGAGGUAUCCGCAAGGAUGGGAAC
UCAGGGAACUGAAACAUCUCAGUACCUGAAGGAGAAGAAA
GAGAAUUCGAUUCCGUUAGUAGCGGCGAGCGAACCCGGAU
CAGCCCAAAUUCAACCCCUCAAGCCGAAGUGGCUGGAAAG
CUACACCUCAGAAGGUGAGAGUCCUGUAGGCGAACGAGCG
GUUGACUGUAAGGUCGUUGUUCGUGAAACGAUGACUGAAU
CCGCGCGGACCACCGCGCAAGGCUAAAUACUCCCAGUGAC
CGAUAGCGCAUAGUACCGUGAGGGAAAGGUGAAAAGAACC
CCGGGAGGGGAGUGAAAGAGAACCUGAAACCGUGGACUUA
CAAGCAGUCAUGGCACCUUAUGCGUGUUAUGGCGUGCCUA
UUGAAGCAUGAGCCGGCGACUUAGACCUGACGUGCGAGCU
UAAGUUGAAAAACGGAGGCGGAGCGAAAGCGAGUCCGAAU
AGGGCGGCAUUAGUACGUCGGGCUAGACUCGAAACCAGGU
GAGCUAAGCAUGACCAGGUUGAAACCCCCGUGACAGGGGG
CGGAGGACCGAACCGGUGCCUGCUGAAACAGUCUCGGAUG
AGUUGUGUUUAGGAGUGAAAAGCUAACCGAACCUGGAGAU
AGCUAGUUCUCCCCGAAAUGUAUUGAGGUACAGCCUCGGA
UGUUGACCAUGUCCUGUAGAGCACUCACAAGGCUAAAACC
UUAUGAAACUCCGAAGGGGCACGCGUUUAGUCCGGGAGUG
AGGCUGCGAGAGCUAACUUCCGUAGCCGAGAGGGAAACAA
CCCAGACCAUCAGCUAAGGUCCCUAAAUGAUCGCUCAGUG
GUUAAGGAUGUGUCGUCGCAUAGACAGCCAGGAGGUUGGC
UUAGAAGCAGCCACCCUUCAAAGAGUGCGUAAUAGCUCAC
UGGUCGAGUGACGAUGCGCCGAAAAUGAUCGGGGCUCAAG
UGAUCUACCGAAGCUAUGGAUUCAACUCGCGAAGCGAGUU
GUCUGGUAGGGGAGCGUUCAGUCCGCGGAGAAGCCAUACC
GGAAGGAGUGGUGGAGCCGACUGAAGUGCGGAUGCCGGCA
UGAGUAACGAUAAAAGAAGUGAGAAUCUUCUUCGCCGUAA
GGACAAGGGUUCCUGGGGAAGGGUCGUCCGCCCAGGGAAA
GUCGGGACCUAAGGUGAGGCCGAACGGCGCAGCCGAUGGA
CAGCAGGUCAAGAUUCCUGCACCGAUCAUGUGGAGUGAUG
GAGGGACGCAUUACGCUAUCCAAUGCCAAGCUAUGGCUAU
GCUGGUUGGUACGCUCAAGGGCGAUCGGGUCAGAAAAUCU
ACCGGUCACAUGCCUCAGACGUAUCGGGAGCUUCCUCGGA
AGCGAAGUUGGAAACGCGACGGUGCCAAGAAAAGCUUCUA
AACGUUGAAACAUGAUUGCCCGUACCGCAAACCGACACAG
GUGUCCGAGUGUCAAUGCACUAAGGCGCGCGAGAGAACCC
UCGUUAAGGAACUUUGCAAUCUCACCCCGUAACUUCGGAA
GAAGGGGUCCCCACGCUUCGCGUGGGGCGCAGUGAAUAGG
CCCAGGCGACUGUUUACCAAAAUCACAGCACUCUGCCAAC
ACGAACAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGC
CGGAAGGUCAAGUGGAGCGGUGCAAGCUGCGAAAUGAAGC
CCCGGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUA
GCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAAG
GCGUAACGAUCUGGGCGCUGUCUCAACGAGGGACUCGGUG
AAAUUGAAUUGGCUGUAAAGAUGCGGCCUACCCGUAGCAG
GACGAAAAGACCCCGUGGAGCUUUACUAUAGUCUGGCAUU
GGGAUUCGGGUUUCUCUGCGUAGGUGGGAGAAACUGGCCG
GUCGGUGGCCACCCUGAGAAACUUGGAUUUCUAACCUGAA
AAAUCACUUUCGGGGACCGUGCUUGGCGGGUAGUUUGACU
GGGGCGGUCGCCUCCCAAAAUGUAACGGAGGCGCCCAAAG
GUCACCUCAAGACGGUUGGAAAUCGUCUGUAGAGCGCAAA
GGUAGAAGGUGGCUUGACUGCGAGACUGACACGUCGAGCA
GGGAGGAAACUCGGGCUUAGUGAACCGGUGGUACCGUGUG
GAAGGGCCAUCGAUCAACGGAUAAAAGUUACCCCGGGGAU
AACAGGCUGAUCUCCCCCGAGAGUCCAUAUCGGCGGGGAG
GUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUG
AAGAAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCG
GCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGU
CUCUAUCCGCUACGGGCGCAGGAGAAUUGAGGGGAGUUGC
UCCUAGUACGAGAGGACCGGAGUGAACGGACCGCUGGUCU
CCCUGCUGUCGUACCAACGGCACAUGCAGGGUAGCUAUGU
CCGGAACGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCC
AGCCCCAAGAUGAGUUCUCCCACUGUUCAGGUAAGACUCC
CGGAAGACCACCGGGUUAAGAGGCCAGGCGUGCACGCAUA
GCAAUGUGUUCAGCGGACUGGUGCUCAUCAGUCGAGGUCU
UGACCA
|
| 8: |
MISDIRKDAEVRMDKCVEAFKTQISKIRTGGGGTEERRKD
LTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDD
DRRSQDDVQKLTDAAIKKIEAALADKEAELMQF
|
| 9: |
CCCCCGUGCCCAUAGCACUGUGGAACCACCCCACCCCAUG
CCGAACUGGGUCGUGAAACACAGCAGCGCCAAUGAUACUC
GGACCGCAGGGUCCCGGAAAAGUCGGUCAGCGCGGGGG
|
| K: |
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKS
NQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMG
KGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHK
LPIQTKMVKREVYDEA
|
| U: |
AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQR
GTKFKAGQGVGMGRDHTLFALSDGKVVFINKGKGARFISI
EAAQ
|
|
|
Description
|
|
Functional site
|
|
|
1)
|
chain |
8 |
| residue |
90 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-acetyllysine => ECO:0000255|HAMAP-Rule:MF_00040, ECO:0000269|PubMed:18723842
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
2)
|
chain |
K |
| residue |
60-71 |
| type |
prosite |
| sequence |
RRGGKIYIRIFP
|
| description |
RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. RRgGKIYIRIFP
|
| source |
prosite : PS00586
|
|
|
3)
|
chain |
K |
| residue |
83-94 |
| type |
prosite |
| sequence |
RMGKGKGAVEYW
|
| description |
RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGkGKGaveyW
|
| source |
prosite : PS00701
|
|
|
4)
|
chain |
U |
| residue |
34-48 |
| type |
prosite |
| sequence |
GNILVRQRGTKFKAG
|
| description |
RIBOSOMAL_L27 Ribosomal protein L27 signature. GnILvRQRGtkfkaG
|
| source |
prosite : PS00831
|
|
|
|