eF-site ID 1y1v-B
PDB Code 1y1v
Chain B

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Title Refined RNA Polymerase II-TFIIS complex
Classification TRANSFERASE/TRANSCRIPTION
Compound DNA-directed RNA polymerase II largest subunit
Source ORGANISM_COMMON: baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae;
Sequence B:  DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL
QDIICEDSTLIISFGKIYVTKPMVNESDGVTHALYPQEAR
LRNLTYSSGLFVDVKKKVFIGRLPIMLRSKNCYLSEATES
DLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFK
KAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR
TIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVND
WQMLEMLKPCVEDGFVIQDRETALDFIGKEKRIQYAKDIL
QKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQD
DRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTV
ELAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLN
RYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCP
AETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGME
PLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLR
RKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDE
SLGHKELKVRKGHIAKLMATEYQDEYTWSSLLNEGLVEYI
DAEEEESILIAMQPEDLEPAEADVDPAKRIRVSHHATTFT
HCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG
VFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPA
GQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY
MDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLI
APGVRVSGEDVIIGKTTPISSKRDASTPLRSTENGIVDQV
LVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGI
TYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS
KVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVM
YNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQ
VLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLM
EASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIY
QIHIPYAAKLLFQELMAMNITPRLYTDRSRDF
Description


Functional site

1) chain B
residue 1163
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1307
source : AC4

2) chain B
residue 1166
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1307
source : AC4

3) chain B
residue 1182
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1307
source : AC4

4) chain B
residue 1185
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1307
source : AC4

5) chain B
residue 837
type catalytic
sequence D
description 788
source MCSA : MCSA1

6) chain B
residue 977-989
type prosite
sequence GDKFASRHGQKGT
description RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
source prosite : PS01166

7) chain B
residue 1185
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00472
source Swiss-Prot : SWS_FT_FI2


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