eF-site ID 1x6m-ABCD
PDB Code 1x6m
Chain A, B, C, D

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Title Crystal structure of the glutathione-dependent formaldehyde-activating enzyme (Gfa)
Classification LYASE
Compound Glutathione-dependent formaldehyde-activating enzyme
Source Paracoccus denitrificans (GFA_PARDE)
Sequence A:  GHMVDTSGVKIHPAVDNGIKPAQPGFAGGTLHCKCSTNPV
RVAVRAQTAHNHVCGCTKCWKPEGAIFSQVAVVGRDALEV
LEGAEKLEIVNAEAPIQRHRCRDCGVHMYGRIENRDHPFY
GLDFVHTELSDEDGWSAPEFAAFVSSIIESGVDPSRMEAI
RARLRELGLEPYDALSPPLMDAIATHIAKRSGALAA
B:  GHMVDTSGVKIHPAVDNGIKPAQPGFAGGTLHCKCSTNPV
RVAVRAQTAHNHVCGCTKCWKPEGAIFSQVAVVGRDALEV
LEGAEKLEIVNAEAPIQRHRCRDCGVHMYGRIENRDHPFY
GLDFVHTELSDEDGWSAPEFAAFVSSIIESGVDPSRMEAI
RARLRELGLEPYDALSPPLMDAIATHIAKRSGALAA
C:  MVDTSGVKIHPAVDNGIKPAQPGFAGGTLHCKCSTNPVRV
AVRAQTAHNHVCGCTKCWKPEGAIFSQVAVVGRDALEVLE
GAEKLEIVNAEAPIQRHRCRDCGVHMYGRIENRDHPFYGL
DFVHTELSDEDGWSAPEFAAFVSSIIESGVDPSRMEAIRA
RLRELGLEPYDALSPPLMDAIATHIAKRSGALAA
D:  MVDTSGVKIHPAVDNGIKPAQPGFAGGTLHCKCSTNPVRV
AVRAQTAHNHVCGCTKCWKPEGAIFSQVAVVGRDALEVLE
GAEKLEIVNAEAPIQRHRCRDCGVHMYGRIENRDHPFYGL
DFVHTELSDEDGWSAPEFAAFVSSIIESGVDPSRMEAIRA
RLRELGLEPYDALSPPLMDAIATHIAKRSGALAA
Description


Functional site

1) chain A
residue 33
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 200
source : AC1

2) chain A
residue 35
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 200
source : AC1

3) chain A
residue 101
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 200
source : AC1

4) chain A
residue 104
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 200
source : AC1

5) chain A
residue 54
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 201
source : AC2

6) chain A
residue 56
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 201
source : AC2

7) chain A
residue 59
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 201
source : AC2

8) chain B
residue 33
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 200
source : AC3

9) chain B
residue 35
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 200
source : AC3

10) chain B
residue 101
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 200
source : AC3

11) chain B
residue 104
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 200
source : AC3

12) chain B
residue 54
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 201
source : AC4

13) chain B
residue 56
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 201
source : AC4

14) chain B
residue 59
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 201
source : AC4

15) chain C
residue 33
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 200
source : AC5

16) chain C
residue 35
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 200
source : AC5

17) chain C
residue 101
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 200
source : AC5

18) chain C
residue 104
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 200
source : AC5

19) chain C
residue 54
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 201
source : AC6

20) chain C
residue 56
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 201
source : AC6

21) chain C
residue 59
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 201
source : AC6

22) chain D
residue 33
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 200
source : AC7

23) chain D
residue 35
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 200
source : AC7

24) chain D
residue 101
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 200
source : AC7

25) chain D
residue 104
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 200
source : AC7

26) chain D
residue 54
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 201
source : AC8

27) chain D
residue 56
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 201
source : AC8

28) chain D
residue 59
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 201
source : AC8

29) chain A
residue 94
type
sequence A
description BINDING SITE FOR RESIDUE SO4 A 501
source : AC9

30) chain A
residue 95
type
sequence P
description BINDING SITE FOR RESIDUE SO4 A 501
source : AC9

31) chain A
residue 96
type
sequence I
description BINDING SITE FOR RESIDUE SO4 A 501
source : AC9

32) chain A
residue 98
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 501
source : AC9

33) chain B
residue 58
type
sequence K
description BINDING SITE FOR RESIDUE SO4 B 502
source : BC1

34) chain B
residue 94
type
sequence A
description BINDING SITE FOR RESIDUE SO4 B 502
source : BC1

35) chain B
residue 95
type
sequence P
description BINDING SITE FOR RESIDUE SO4 B 502
source : BC1

36) chain B
residue 96
type
sequence I
description BINDING SITE FOR RESIDUE SO4 B 502
source : BC1

37) chain B
residue 98
type
sequence R
description BINDING SITE FOR RESIDUE SO4 B 502
source : BC1

38) chain C
residue 58
type
sequence K
description BINDING SITE FOR RESIDUE SO4 C 503
source : BC2

39) chain C
residue 95
type
sequence P
description BINDING SITE FOR RESIDUE SO4 C 503
source : BC2

40) chain C
residue 96
type
sequence I
description BINDING SITE FOR RESIDUE SO4 C 503
source : BC2

41) chain C
residue 98
type
sequence R
description BINDING SITE FOR RESIDUE SO4 C 503
source : BC2

42) chain C
residue 14
type
sequence A
description BINDING SITE FOR RESIDUE SO4 C 504
source : BC3

43) chain C
residue 20
type
sequence K
description BINDING SITE FOR RESIDUE SO4 C 504
source : BC3

44) chain C
residue 69
type
sequence Q
description BINDING SITE FOR RESIDUE SO4 C 504
source : BC3

45) chain C
residue 128
type
sequence E
description BINDING SITE FOR RESIDUE SO4 C 504
source : BC3

46) chain D
residue 58
type
sequence K
description BINDING SITE FOR RESIDUE SO4 D 505
source : BC4

47) chain D
residue 94
type
sequence A
description BINDING SITE FOR RESIDUE SO4 D 505
source : BC4

48) chain D
residue 95
type
sequence P
description BINDING SITE FOR RESIDUE SO4 D 505
source : BC4

49) chain D
residue 96
type
sequence I
description BINDING SITE FOR RESIDUE SO4 D 505
source : BC4

50) chain D
residue 98
type
sequence R
description BINDING SITE FOR RESIDUE SO4 D 505
source : BC4

51) chain D
residue 14
type
sequence A
description BINDING SITE FOR RESIDUE SO4 D 506
source : BC5

52) chain D
residue 20
type
sequence K
description BINDING SITE FOR RESIDUE SO4 D 506
source : BC5

53) chain D
residue 69
type
sequence Q
description BINDING SITE FOR RESIDUE SO4 D 506
source : BC5

54) chain D
residue 128
type
sequence E
description BINDING SITE FOR RESIDUE SO4 D 506
source : BC5

55) chain A
residue 177
type
sequence P
description BINDING SITE FOR RESIDUE SO4 D 507
source : BC6

56) chain D
residue 161
type
sequence R
description BINDING SITE FOR RESIDUE SO4 D 507
source : BC6

57) chain D
residue 165
type
sequence R
description BINDING SITE FOR RESIDUE SO4 D 507
source : BC6

58) chain B
residue 58
type
sequence K
description BINDING SITE FOR RESIDUE GOL B 601
source : BC7

59) chain B
residue 90
type
sequence V
description BINDING SITE FOR RESIDUE GOL B 601
source : BC7

60) chain B
residue 91
type
sequence N
description BINDING SITE FOR RESIDUE GOL B 601
source : BC7

61) chain B
residue 94
type
sequence A
description BINDING SITE FOR RESIDUE GOL B 601
source : BC7

62) chain B
residue 96
type
sequence I
description BINDING SITE FOR RESIDUE GOL B 601
source : BC7

63) chain B
residue 98
type
sequence R
description BINDING SITE FOR RESIDUE GOL B 601
source : BC7

64) chain B
residue 14
type
sequence A
description BINDING SITE FOR RESIDUE GOL B 602
source : BC8

65) chain B
residue 69
type
sequence Q
description BINDING SITE FOR RESIDUE GOL B 602
source : BC8

66) chain B
residue 128
type
sequence E
description BINDING SITE FOR RESIDUE GOL B 602
source : BC8

67) chain B
residue 47
type
sequence Q
description BINDING SITE FOR RESIDUE GOL B 603
source : BC9

68) chain B
residue 73
type
sequence V
description BINDING SITE FOR RESIDUE GOL B 603
source : BC9

69) chain B
residue 74
type
sequence G
description BINDING SITE FOR RESIDUE GOL B 603
source : BC9

70) chain C
residue 179
type
sequence L
description BINDING SITE FOR RESIDUE GOL C 604
source : CC1

71) chain C
residue 182
type
sequence A
description BINDING SITE FOR RESIDUE GOL C 604
source : CC1

72) chain D
residue 118
type
sequence P
description BINDING SITE FOR RESIDUE GOL D 605
source : CC2

73) chain D
residue 122
type
sequence L
description BINDING SITE FOR RESIDUE GOL D 605
source : CC2

74) chain D
residue 179
type
sequence L
description BINDING SITE FOR RESIDUE GOL D 605
source : CC2

75) chain D
residue 182
type
sequence A
description BINDING SITE FOR RESIDUE GOL D 605
source : CC2

76) chain A
residue 55
type catalytic
sequence G
description 712
source MCSA : MCSA1

77) chain A
residue 57
type catalytic
sequence T
description 712
source MCSA : MCSA1

78) chain A
residue 60
type catalytic
sequence W
description 712
source MCSA : MCSA1

79) chain B
residue 55
type catalytic
sequence G
description 712
source MCSA : MCSA2

80) chain B
residue 57
type catalytic
sequence T
description 712
source MCSA : MCSA2

81) chain B
residue 60
type catalytic
sequence W
description 712
source MCSA : MCSA2

82) chain C
residue 55
type catalytic
sequence G
description 712
source MCSA : MCSA3

83) chain C
residue 57
type catalytic
sequence T
description 712
source MCSA : MCSA3

84) chain C
residue 60
type catalytic
sequence W
description 712
source MCSA : MCSA3

85) chain D
residue 55
type catalytic
sequence G
description 712
source MCSA : MCSA4

86) chain D
residue 57
type catalytic
sequence T
description 712
source MCSA : MCSA4

87) chain D
residue 60
type catalytic
sequence W
description 712
source MCSA : MCSA4

88) chain A
residue 34
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

89) chain B
residue 55
type BINDING
sequence G
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

90) chain B
residue 57
type BINDING
sequence T
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

91) chain B
residue 60
type BINDING
sequence W
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

92) chain B
residue 102
type BINDING
sequence R
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

93) chain B
residue 105
type BINDING
sequence G
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

94) chain C
residue 34
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

95) chain C
residue 36
type BINDING
sequence S
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

96) chain C
residue 55
type BINDING
sequence G
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

97) chain C
residue 57
type BINDING
sequence T
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

98) chain C
residue 60
type BINDING
sequence W
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

99) chain A
residue 36
type BINDING
sequence S
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

100) chain C
residue 102
type BINDING
sequence R
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

101) chain C
residue 105
type BINDING
sequence G
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

102) chain D
residue 34
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

103) chain D
residue 36
type BINDING
sequence S
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

104) chain D
residue 55
type BINDING
sequence G
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

105) chain D
residue 57
type BINDING
sequence T
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

106) chain D
residue 60
type BINDING
sequence W
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

107) chain D
residue 102
type BINDING
sequence R
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

108) chain D
residue 105
type BINDING
sequence G
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

109) chain A
residue 55
type BINDING
sequence G
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

110) chain A
residue 57
type BINDING
sequence T
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

111) chain A
residue 60
type BINDING
sequence W
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

112) chain A
residue 102
type BINDING
sequence R
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

113) chain A
residue 105
type BINDING
sequence G
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

114) chain B
residue 34
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1

115) chain B
residue 36
type BINDING
sequence S
description BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
source Swiss-Prot : SWS_FT_FI1


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