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eF-site ID
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1vtl-ABCDEF |
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PDB Code
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1vtl |
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Chain
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A, B, C, D, E, F |
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click to enlarge
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Title
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CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A TATA ELEMENT |
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Classification
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TRANSCRIPTION/DNA |
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Compound
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DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3') |
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Source
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ORGANISM_COMMON: mouse-ear cress; ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; |
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Sequence
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A: |
GCTATAAAAGGGCA
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| B: |
TGCCCTTTTATAGC
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| C: |
GCTATAAAAGGGCA
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| D: |
TGCCCTTTTATAGC
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| E: |
DLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEY
NPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKM
AARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG
LAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVI
TGAKMRDETYKAFENIYPVLSEFRKI
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| F: |
DLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEY
NPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKM
AARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG
LAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVI
TGAKMRDETYKAFENIYPVLSEFRKI
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Description
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Functional site
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1)
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chain |
E |
| residue |
52-101 |
| type |
prosite |
| sequence |
YNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSK
MAARKYARIV
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| description |
TFIID Transcription factor TFIID repeat signature. YnPkrFaaVImRirePKttaLIFaSGKMvctGAKsedfskmAarkyariV
|
| source |
prosite : PS00351
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2)
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chain |
E |
| residue |
143-192 |
| type |
prosite |
| sequence |
YEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETY
KAFENIYPVL
|
| description |
TFIID Transcription factor TFIID repeat signature. YnPkrFaaVImRirePKttaLIFaSGKMvctGAKsedfskmAarkyariV
|
| source |
prosite : PS00351
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