|
eF-site ID
|
1vol-ABCD |
PDB Code
|
1vol |
Chain
|
A, B, C, D |
|
click to enlarge
|
|
Title
|
TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX |
Classification
|
TRANSCRIPTION/DNA |
Compound
|
DNA (5'-D(*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*G)-3') |
Source
|
(1VOL) |
|
Sequence
|
A: |
AMMNAFKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLK
GRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIG
RCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAA
THIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQK
EIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK
LPQL
|
B: |
VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAE
YNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSK
MAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLE
GLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIV
ITGAKMRDETYKAFENIYPVLSEFRKI
|
C: |
GGCTATAAAAGGGCTG
|
D: |
CAGCCCTTTTATAGCC
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
52-101 |
type |
prosite |
sequence |
YNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSK
MAARKYARIV
|
description |
TFIID Transcription factor TFIID repeat signature. YnPkrFaaVImRirePKttaLIFaSGKMvctGAKsedfskmAarkyariV
|
source |
prosite : PS00351
|
|
2)
|
chain |
B |
residue |
143-192 |
type |
prosite |
sequence |
YEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETY
KAFENIYPVL
|
description |
TFIID Transcription factor TFIID repeat signature. YnPkrFaaVImRirePKttaLIFaSGKMvctGAKsedfskmAarkyariV
|
source |
prosite : PS00351
|
|
3)
|
chain |
A |
residue |
153-168 |
type |
prosite |
sequence |
GRANDAIASACLYIAC
|
description |
TFIIB Transcription factor TFIIB repeat signature. GRandAIASACLYIAC
|
source |
prosite : PS00782
|
|
4)
|
chain |
A |
residue |
247-262 |
type |
prosite |
sequence |
GRSPISVAAAAIYMAS
|
description |
TFIIB Transcription factor TFIIB repeat signature. GRandAIASACLYIAC
|
source |
prosite : PS00782
|
|
|
|