eF-site ID 1ve6-AB PDB Code 1ve6 Chain A, B click to enlarge Title Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1 Classification HYDROLASE Compound Acylamino-acid-releasing enzyme Source Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (APEH_AERPE) Sequence A:  EFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVN AYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGA EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFT GATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGL GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMK VTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTA ITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGR VVLWRGKLVTSHTSLSTPPRIVSLPSGEPLLEGGLPEDLR RSIAGSRLVWVESFDGSRVPTYVLESGRAPTPGPTVVLVH GGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEW RLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYG GYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRN FIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRT PLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKI LLPAVFFLATQRER B:  EFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVN AYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGA EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFT GATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGL GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMK VTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTA ITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGR VVLWRGKLVTSHTSLSTPPRIVSLPSGEPLLEGGLPEDLR RSIAGSRLVWVESFDGSRVPTYVLESGRAPTPGPTVVLVH GGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEW RLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYG GYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRN FIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRT PLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKI LLPAVFFLATQRER Description (1)  Acylamino-acid-releasing enzyme (E.C.3.4.19.1) Functional site 1) chain A residue 24 type ligand sequence K description BINDING SITE FOR RESIDUE BOG A 936 source : AC1 2) chain A residue 25 type ligand sequence Y description BINDING SITE FOR RESIDUE BOG A 936 source : AC1 3) chain A residue 26 type ligand sequence S description BINDING SITE FOR RESIDUE BOG A 936 source : AC1 4) chain A residue 39 type ligand sequence V description BINDING SITE FOR RESIDUE BOG A 936 source : AC1 5) chain A residue 41 type ligand sequence F description BINDING SITE FOR RESIDUE BOG A 936 source : AC1 6) chain A residue 306 type ligand sequence P description BINDING SITE FOR RESIDUE BOG A 936 source : AC1 7) chain A residue 558 type ligand sequence I description BINDING SITE FOR RESIDUE BOG A 936 source : AC1 8) chain A residue 564 type ligand sequence A description BINDING SITE FOR RESIDUE BOG A 936 source : AC1 9) chain A residue 568 type ligand sequence L description BINDING SITE FOR RESIDUE BOG A 936 source : AC1 10) chain B residue 24 type ligand sequence K description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 11) chain B residue 25 type ligand sequence Y description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 12) chain B residue 26 type ligand sequence S description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 13) chain B residue 39 type ligand sequence V description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 14) chain B residue 41 type ligand sequence F description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 15) chain B residue 46 type ligand sequence V description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 16) chain B residue 306 type ligand sequence P description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 17) chain B residue 381 type ligand sequence F description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 18) chain B residue 558 type ligand sequence I description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 19) chain B residue 564 type ligand sequence A description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 20) chain B residue 568 type ligand sequence L description BINDING SITE FOR RESIDUE BOG B 1936 source : AC2 21) chain A residue 157 type ligand sequence S description BINDING SITE FOR RESIDUE GOL A 751 source : AC3 22) chain A residue 200 type ligand sequence A description BINDING SITE FOR RESIDUE GOL A 751 source : AC3 23) chain A residue 250 type ligand sequence W description BINDING SITE FOR RESIDUE GOL A 751 source : AC3 24) chain A residue 251 type ligand sequence L description BINDING SITE FOR RESIDUE GOL A 751 source : AC3 25) chain B residue 157 type ligand sequence S description BINDING SITE FOR RESIDUE GOL B 1751 source : AC4 26) chain B residue 167 type ligand sequence L description BINDING SITE FOR RESIDUE GOL B 1751 source : AC4 27) chain B residue 199 type ligand sequence S description BINDING SITE FOR RESIDUE GOL B 1751 source : AC4 28) chain B residue 200 type ligand sequence A description BINDING SITE FOR RESIDUE GOL B 1751 source : AC4 29) chain B residue 250 type ligand sequence W description BINDING SITE FOR RESIDUE GOL B 1751 source : AC4 30) chain B residue 251 type ligand sequence L description BINDING SITE FOR RESIDUE GOL B 1751 source : AC4 31) chain A residue 445 type ACT_SITE ligand sequence S description Charge relay system (By similarity). source Swiss-Prot : SWS_FT_FI1 32) chain A residue 524 type ACT_SITE ligand sequence D description Charge relay system (By similarity). source Swiss-Prot : SWS_FT_FI1 33) chain A residue 556 type ACT_SITE ligand sequence H description Charge relay system (By similarity). source Swiss-Prot : SWS_FT_FI1 34) chain B residue 445 type ACT_SITE ligand sequence S description Charge relay system (By similarity). source Swiss-Prot : SWS_FT_FI2 35) chain B residue 524 type ACT_SITE ligand sequence D description Charge relay system (By similarity). source Swiss-Prot : SWS_FT_FI2 36) chain B residue 556 type ACT_SITE ligand sequence H description Charge relay system (By similarity). source Swiss-Prot : SWS_FT_FI2 37) chain A residue 20 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence I description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_A_936 38) chain A residue 24-26 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence KYS description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_A_936 39) chain A residue 39-41 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence VGF description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_A_936 40) chain A residue 46 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence V description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_A_936 41) chain A residue 306 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence P description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_A_936 42) chain A residue 380-381 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence TF description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_A_936 43) chain A residue 558-559 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence IN description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_A_936 44) chain A residue 564 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence A description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_A_936 45) chain A residue 567-568 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence IL description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_A_936 46) chain A residue 69 type binding ligand GOL: GLYCEROL sequence D description GLYCEROL binding site source pdb_hetatom : GOL_1ve6_A_751 47) chain A residue 156-158 type binding ligand GOL: GLYCEROL sequence VSD description GLYCEROL binding site source pdb_hetatom : GOL_1ve6_A_751 48) chain A residue 167 type binding ligand GOL: GLYCEROL sequence L description GLYCEROL binding site source pdb_hetatom : GOL_1ve6_A_751 49) chain A residue 198-201 type binding ligand GOL: GLYCEROL sequence SSAS description GLYCEROL binding site source pdb_hetatom : GOL_1ve6_A_751 50) chain A residue 250-252 type binding ligand GOL: GLYCEROL sequence WLG description GLYCEROL binding site source pdb_hetatom : GOL_1ve6_A_751 51) chain B residue 20 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence I description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_B_1936 52) chain B residue 24-26 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence KYS description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_B_1936 53) chain B residue 39-41 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence VGF description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_B_1936 54) chain B residue 46 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence V description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_B_1936 55) chain B residue 306 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence P description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_B_1936 56) chain B residue 380-381 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence TF description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_B_1936 57) chain B residue 558-559 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence IN description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_B_1936 58) chain B residue 564 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence A description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_B_1936 59) chain B residue 567-568 type binding ligand BOG: B-OCTYLGLUCOSIDE sequence IL description B-OCTYLGLUCOSIDE binding site source pdb_hetatom : BOG_1ve6_B_1936 60) chain B residue 156-158 type binding ligand GOL: GLYCEROL sequence VSD description GLYCEROL binding site source pdb_hetatom : GOL_1ve6_B_1751 61) chain B residue 167 type binding ligand GOL: GLYCEROL sequence L description GLYCEROL binding site source pdb_hetatom : GOL_1ve6_B_1751 62) chain B residue 198-201 type binding ligand GOL: GLYCEROL sequence SSAS description GLYCEROL binding site source pdb_hetatom : GOL_1ve6_B_1751 63) chain B residue 250-252 type binding ligand GOL: GLYCEROL sequence WLG description GLYCEROL binding site source pdb_hetatom : GOL_1ve6_B_1751 64) chain A residue 445 type catalytic ligand sequence S description Annotated By Reference To The Literature 1c4x source CSA : CSA1 65) chain A residue 556 type catalytic ligand sequence H description Annotated By Reference To The Literature 1c4x source CSA : CSA1 66) chain A residue 524 type catalytic ligand sequence D description Annotated By Reference To The Literature 1c4x source CSA : CSA1 67) chain B residue 445 type catalytic ligand sequence S description Annotated By Reference To The Literature 1c4x source CSA : CSA2 68) chain B residue 556 type catalytic ligand sequence H description Annotated By Reference To The Literature 1c4x source CSA : CSA2 69) chain B residue 524 type catalytic ligand sequence D description Annotated By Reference To The Literature 1c4x source CSA : CSA2

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