|
|
eF-site ID
|
1um2-ABCD |
|
PDB Code
|
1um2 |
|
Chain
|
A, B, C, D |
|
click to enlarge
|
|
|
Title
|
Crystal Structure of the Vma1-Derived Endonuclease with the Ligated Extein Segment |
|
Classification
|
HYDROLASE |
|
Compound
|
ENDONUCLEASE PI-SCEI |
|
Source
|
(VATA_YEAST) |
|
|
Sequence
|
A: |
SFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKL
PRGRETMYSVVQKSPELLKFTCNATNELVVRTPRSVRRLS
RTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPIS
EGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRK
ATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLG
LWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYK
DRKEPQVAKTVNLYSKENPLWDAIVGLGFLKDGVKNIPSF
LSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSV
RDGLVSLARSLGLVVSVNAEPISYAIYMSGGDVLLNVLSK
CAGSKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLS
DDSDHQFLLANQVVVHN
|
| B: |
SFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKL
PRGRETMYSVVQKELLKFTCNATNELVVRTPRSVRRLSRT
IKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPISEG
PERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKAT
YQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLW
IGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDR
KEPQVAKTVNLYSLNTENPLWDAIVGLGFLKDGVKNIPSF
LSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSV
RDGLVSLARSLGLVVSVNAEPHKISYAIYMSGGDVLLNVL
SKCAGSKKFRPAPAAAFARECRGFYFELQELKEDDYYGIT
LSDDSDHQFLLANQVVVHN
|
| C: |
YVGSGER
|
| D: |
YVGSGER
|
|
|
Description
|
|
Functional site
|
|
|
1)
|
chain |
C |
| residue |
738 |
| type |
catalytic |
| sequence |
S
|
| description |
508
|
| source |
MCSA : MCSA1
|
|
|
2)
|
chain |
A |
| residue |
359 |
| type |
catalytic |
| sequence |
N
|
| description |
508
|
| source |
MCSA : MCSA1
|
|
|
3)
|
chain |
A |
| residue |
361 |
| type |
catalytic |
| sequence |
T
|
| description |
508
|
| source |
MCSA : MCSA1
|
|
|
4)
|
chain |
A |
| residue |
362 |
| type |
catalytic |
| sequence |
N
|
| description |
508
|
| source |
MCSA : MCSA1
|
|
|
5)
|
chain |
A |
| residue |
584 |
| type |
catalytic |
| sequence |
K
|
| description |
508
|
| source |
MCSA : MCSA1
|
|
|
6)
|
chain |
A |
| residue |
686 |
| type |
catalytic |
| sequence |
K
|
| description |
508
|
| source |
MCSA : MCSA1
|
|
|
7)
|
chain |
A |
| residue |
716 |
| type |
catalytic |
| sequence |
G
|
| description |
508
|
| source |
MCSA : MCSA1
|
|
|
8)
|
chain |
A |
| residue |
717 |
| type |
catalytic |
| sequence |
I
|
| description |
508
|
| source |
MCSA : MCSA1
|
|
|
9)
|
chain |
A |
| residue |
737 |
| type |
catalytic |
| sequence |
N
|
| description |
508
|
| source |
MCSA : MCSA1
|
|
|
10)
|
chain |
B |
| residue |
716 |
| type |
catalytic |
| sequence |
G
|
| description |
508
|
| source |
MCSA : MCSA2
|
|
|
11)
|
chain |
D |
| residue |
738 |
| type |
catalytic |
| sequence |
S
|
| description |
508
|
| source |
MCSA : MCSA2
|
|
|
12)
|
chain |
B |
| residue |
359 |
| type |
catalytic |
| sequence |
N
|
| description |
508
|
| source |
MCSA : MCSA2
|
|
|
13)
|
chain |
B |
| residue |
361 |
| type |
catalytic |
| sequence |
T
|
| description |
508
|
| source |
MCSA : MCSA2
|
|
|
14)
|
chain |
B |
| residue |
362 |
| type |
catalytic |
| sequence |
N
|
| description |
508
|
| source |
MCSA : MCSA2
|
|
|
15)
|
chain |
B |
| residue |
584 |
| type |
catalytic |
| sequence |
K
|
| description |
508
|
| source |
MCSA : MCSA2
|
|
|
16)
|
chain |
B |
| residue |
686 |
| type |
catalytic |
| sequence |
K
|
| description |
508
|
| source |
MCSA : MCSA2
|
|
|
17)
|
chain |
B |
| residue |
717 |
| type |
catalytic |
| sequence |
I
|
| description |
508
|
| source |
MCSA : MCSA2
|
|
|
18)
|
chain |
B |
| residue |
737 |
| type |
catalytic |
| sequence |
N
|
| description |
508
|
| source |
MCSA : MCSA2
|
|
|
|