eF-site ID 1ua1-A
PDB Code 1ua1
Chain A

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Title Structure of aminofluorene adduct paired opposite cytosine at the polymerase active site.
Classification TRANSFERASE/DNA
Compound DNA primer strand
Source Geobacillus stearothermophilus (Bacillus stearothermophilus) (DPO1_BACST)
Sequence A:  AAMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIA
VVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRA
AVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM
KQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWE
LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVD
TKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGV
ILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH
YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRL
SSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ
IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDE
VTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFI
ERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDI
TSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLK
EERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAV
TLRVPLKVDYHYGSTWYDAK
Description


Functional site

1) chain A
residue 682
type
sequence H
description BINDING SITE FOR RESIDUE SO4 A 910
source : AC1

2) chain A
residue 702
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 910
source : AC1

3) chain A
residue 706
type
sequence K
description BINDING SITE FOR RESIDUE SO4 A 910
source : AC1

4) chain A
residue 299
type
sequence M
description BINDING SITE FOR RESIDUE SO4 A 911
source : AC2

5) chain A
residue 300
type
sequence A
description BINDING SITE FOR RESIDUE SO4 A 911
source : AC2

6) chain A
residue 343
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 911
source : AC2

7) chain A
residue 677
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 911
source : AC2

8) chain A
residue 779
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 912
source : AC3

9) chain A
residue 819
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A 912
source : AC3

10) chain A
residue 716
type
sequence I
description BINDING SITE FOR RESIDUE AF C 327
source : AC4

11) chain A
residue 720
type
sequence G
description BINDING SITE FOR RESIDUE AF C 327
source : AC4

12) chain A
residue 723
type
sequence Q
description BINDING SITE FOR RESIDUE AF C 327
source : AC4

13) chain A
residue 702-721
type prosite
sequence RRQAKAVNFGIVYGISDYGL
description DNA_POLYMERASE_A DNA polymerase family A signature. RrqAKavnFGivYgiSdygL
source prosite : PS00447


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