eF-site ID 1twh-A
PDB Code 1twh
Chain A

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Title RNA polymerase II complexed with 2'dATP
Classification TRANSCRIPTION
Compound DNA-directed RNA polymerase II largest subunit
Source ORGANISM_COMMON: baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae;
Sequence A:  GQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMD
ETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFG
HIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELM
RQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLV
SRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVL
STEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVP
PPPVRPDLTFKLADILKANISLETLEHNGAPHHAIEEAES
LLQFHVATYMDSIRADFSARTVISGDPNLELDQVGVPKSI
AKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSG
DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSL
HKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH
VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG
IRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP
LWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDG
QIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQ
KVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKV
LDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAG
RLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSV
EGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTP
QEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMV
HYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSD
AAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLD
EEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQT
FHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNA
QRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIE
AQFLRSVVHPGEMVGVLAAQSIGEPATQMTLKKVTSGVPR
LKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEH
TTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHLQQSPWL
LRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDN
DEKLIIRCRVVAEEDHMLKKIENTMLENITLRGVENIERV
VMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGI
DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSY
VNYRHMALLVDVMTTQGGLTSVTTVEILFEAGASAELDDC
RGVSENVILGQMAPIGTGAFDVMIDEESL
Description


Functional site

1) chain A
residue 481
type
sequence D
description BINDING SITE FOR RESIDUE MN A 3009
source : AC1

2) chain A
residue 483
type
sequence D
description BINDING SITE FOR RESIDUE MN A 3009
source : AC1

3) chain A
residue 485
type
sequence D
description BINDING SITE FOR RESIDUE MN A 3009
source : AC1

4) chain A
residue 481
type
sequence D
description BINDING SITE FOR RESIDUE MN A 3010
source : AC2

5) chain A
residue 483
type
sequence D
description BINDING SITE FOR RESIDUE MN A 3010
source : AC2

6) chain A
residue 107
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 3006
source : AC8

7) chain A
residue 110
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 3006
source : AC8

8) chain A
residue 148
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 3006
source : AC8

9) chain A
residue 166
type
sequence G
description BINDING SITE FOR RESIDUE ZN A 3006
source : AC8

10) chain A
residue 167
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 3006
source : AC8

11) chain A
residue 67
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 3008
source : BC1

12) chain A
residue 70
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 3008
source : BC1

13) chain A
residue 77
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 3008
source : BC1

14) chain A
residue 80
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 3008
source : BC1

15) chain A
residue 481
type
sequence D
description BINDING SITE FOR RESIDUE ATP A 3011
source : BC2

16) chain A
residue 483
type
sequence D
description BINDING SITE FOR RESIDUE ATP A 3011
source : BC2

17) chain A
residue 485
type
sequence D
description BINDING SITE FOR RESIDUE ATP A 3011
source : BC2

18) chain A
residue 483
type catalytic
sequence D
description 788
source MCSA : MCSA1

19) chain A
residue 485
type catalytic
sequence D
description 788
source MCSA : MCSA1

20) chain A
residue 483
type ZN_FING
sequence D
description C4-type
source Swiss-Prot : SWS_FT_FI1

21) chain A
residue 485
type ZN_FING
sequence D
description C4-type
source Swiss-Prot : SWS_FT_FI1

22) chain A
residue 107
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

23) chain A
residue 110
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

24) chain A
residue 148
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

25) chain A
residue 167
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

26) chain A
residue 481
type ZN_FING
sequence D
description C4-type
source Swiss-Prot : SWS_FT_FI1


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