eF-site ID 1tp7-D
PDB Code 1tp7
Chain D

click to enlarge
Title Crystal Structure of the RNA-dependent RNA Polymerase from Human Rhinovirus 16
Classification TRANSFERASE
Compound Genome polyprotein
Source Human rhinovirus 16 (HRV-16) (POLG_HRV16)
Sequence D:  GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEP
AVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAH
YSAQLATLDIDPQPIAXEDSVFGXDGLEALDLNTSAGYPY
VTLGIKKKDLINNKTKDISKLKLALDKYDVDLPXITFLKD
ELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHL
NPGVVTGCAVGCDPETFWSKIPLXLDGDCIXAFDYTNYDG
SIHPIWFKALGXVLDNLSFNPTLINRLCNSKHIFKSTYYE
VEGGVPSGCSGTSIFNSXINNIIIRTLVLDAYKHIDLDKL
KIIAYGDDVIFSYKYKLDXEAIAKEGQKYGLTITPADKSS
EFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESI
RWTKKPSQXQEHVLSLCHLXWHNGPEIYKDFETKIRSVSA
GRALYIPPYELLRHEWYEKF
Description (1)  Genome polyprotein (E.C.2.7.7.48)


Functional site

1) chain D
residue 212
type
sequence C
description BINDING SITE FOR RESIDUE SO4 D 473
source : AC4

2) chain D
residue 213
type
sequence D
description BINDING SITE FOR RESIDUE SO4 D 473
source : AC4

3) chain D
residue 216
type
sequence T
description BINDING SITE FOR RESIDUE SO4 D 473
source : AC4

4) chain D
residue 217
type
sequence F
description BINDING SITE FOR RESIDUE SO4 D 473
source : AC4

5) chain D
residue 220
type
sequence K
description BINDING SITE FOR RESIDUE SO4 D 473
source : AC4

6) chain D
residue 234
type BINDING
sequence D
description BINDING => ECO:0000250|UniProtKB:P03300
source Swiss-Prot : SWS_FT_FI1

7) chain D
residue 327
type BINDING
sequence D
description BINDING => ECO:0000250|UniProtKB:P03300
source Swiss-Prot : SWS_FT_FI1


Display surface

Download
Links