eF-site ID 1tp7-ABCD PDB Code 1tp7 Chain A, B, C, D click to enlarge Title Crystal Structure of the RNA-dependent RNA Polymerase from Human Rhinovirus 16 Classification TRANSFERASE Compound Genome polyprotein Source Human rhinovirus 16 (HRV-16) (POLG_HRV16) Sequence A:  GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEP AVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAH YSAQLATLDIDPQPIAXEDSVFGXDGLEALDLNTSAGYPY VTLGIKKKDLINNKTKDISKLKLALDKYDVDLPXITFLKD ELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHL NPGVVTGCAVGCDPETFWSKIPLXLDGDCIXAFDYTNYDG SIHPIWFKALGXVLDNLSFNPTLINRLCNSKHIFKSTYYE VEGGVPSGCSGTSIFNSXINNIIIRTLVLDAYKHIDLDKL KIIAYGDDVIFSYKYKLDXEAIAKEGQKYGLTITPADKSS EFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESI RWTKKPSQXQEHVLSLCHLXWHNGPEIYKDFETKIRSVSA GRALYIPPYELLRHEWYEKF B:  GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEP AVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAH YSAQLATLDIDPQPIAXEDSVFGXDGLEALDLNTSAGYPY VTLGIKKKDLINNKTKDISKLKLALDKYDVDLPXITFLKD ELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHL NPGVVTGCAVGCDPETFWSKIPLXLDGDCIXAFDYTNYDG SIHPIWFKALGXVLDNLSFNPTLINRLCNSKHIFKSTYYE VEGGVPSGCSGTSIFNSXINNIIIRTLVLDAYKHIDLDKL KIIAYGDDVIFSYKYKLDXEAIAKEGQKYGLTITPADKSS EFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESI RWTKKPSQXQEHVLSLCHLXWHNGPEIYKDFETKIRSVSA GRALYIPPYELLRHEWYEKF C:  GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEP AVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAH YSAQLATLDIDPQPIAXEDSVFGXDGLEALDLNTSAGYPY VTLGIKKKDLINNKTKDISKLKLALDKYDVDLPXITFLKD ELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHL NPGVVTGCAVGCDPETFWSKIPLXLDGDCIXAFDYTNYDG SIHPIWFKALGXVLDNLSFNPTLINRLCNSKHIFKSTYYE VEGGVPSGCSGTSIFNSXINNIIIRTLVLDAYKHIDLDKL KIIAYGDDVIFSYKYKLDXEAIAKEGQKYGLTITPADKSS EFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESI RWTKKPSQXQEHVLSLCHLXWHNGPEIYKDFETKIRSVSA GRALYIPPYELLRHEWYEKF D:  GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEP AVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAH YSAQLATLDIDPQPIAXEDSVFGXDGLEALDLNTSAGYPY VTLGIKKKDLINNKTKDISKLKLALDKYDVDLPXITFLKD ELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHL NPGVVTGCAVGCDPETFWSKIPLXLDGDCIXAFDYTNYDG SIHPIWFKALGXVLDNLSFNPTLINRLCNSKHIFKSTYYE VEGGVPSGCSGTSIFNSXINNIIIRTLVLDAYKHIDLDKL KIIAYGDDVIFSYKYKLDXEAIAKEGQKYGLTITPADKSS EFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESI RWTKKPSQXQEHVLSLCHLXWHNGPEIYKDFETKIRSVSA GRALYIPPYELLRHEWYEKF Description (1)  Genome polyprotein (E.C.2.7.7.48) Functional site 1) chain A residue 212 type sequence C description BINDING SITE FOR RESIDUE SO4 A 470 source : AC1 2) chain A residue 213 type sequence D description BINDING SITE FOR RESIDUE SO4 A 470 source : AC1 3) chain A residue 216 type sequence T description BINDING SITE FOR RESIDUE SO4 A 470 source : AC1 4) chain A residue 217 type sequence F description BINDING SITE FOR RESIDUE SO4 A 470 source : AC1 5) chain A residue 220 type sequence K description BINDING SITE FOR RESIDUE SO4 A 470 source : AC1 6) chain B residue 212 type sequence C description BINDING SITE FOR RESIDUE SO4 B 471 source : AC2 7) chain B residue 213 type sequence D description BINDING SITE FOR RESIDUE SO4 B 471 source : AC2 8) chain B residue 216 type sequence T description BINDING SITE FOR RESIDUE SO4 B 471 source : AC2 9) chain B residue 217 type sequence F description BINDING SITE FOR RESIDUE SO4 B 471 source : AC2 10) chain B residue 220 type sequence K description BINDING SITE FOR RESIDUE SO4 B 471 source : AC2 11) chain C residue 212 type sequence C description BINDING SITE FOR RESIDUE SO4 C 472 source : AC3 12) chain C residue 213 type sequence D description BINDING SITE FOR RESIDUE SO4 C 472 source : AC3 13) chain C residue 216 type sequence T description BINDING SITE FOR RESIDUE SO4 C 472 source : AC3 14) chain C residue 217 type sequence F description BINDING SITE FOR RESIDUE SO4 C 472 source : AC3 15) chain C residue 220 type sequence K description BINDING SITE FOR RESIDUE SO4 C 472 source : AC3 16) chain D residue 212 type sequence C description BINDING SITE FOR RESIDUE SO4 D 473 source : AC4 17) chain D residue 213 type sequence D description BINDING SITE FOR RESIDUE SO4 D 473 source : AC4 18) chain D residue 216 type sequence T description BINDING SITE FOR RESIDUE SO4 D 473 source : AC4 19) chain D residue 217 type sequence F description BINDING SITE FOR RESIDUE SO4 D 473 source : AC4 20) chain D residue 220 type sequence K description BINDING SITE FOR RESIDUE SO4 D 473 source : AC4 21) chain A residue 222 type sequence P description BINDING SITE FOR RESIDUE DMX A 500 source : AC5 22) chain A residue 366 type sequence D description BINDING SITE FOR RESIDUE DMX A 500 source : AC5 23) chain A residue 367 type sequence Y description BINDING SITE FOR RESIDUE DMX A 500 source : AC5 24) chain A residue 379 type sequence Q description BINDING SITE FOR RESIDUE DMX A 500 source : AC5 25) chain A residue 387 type sequence I description BINDING SITE FOR RESIDUE DMX A 500 source : AC5 26) chain A residue 234 type BINDING sequence D description BINDING => ECO:0000250|UniProtKB:P03300 source Swiss-Prot : SWS_FT_FI1 27) chain A residue 327 type BINDING sequence D description BINDING => ECO:0000250|UniProtKB:P03300 source Swiss-Prot : SWS_FT_FI1 28) chain B residue 234 type BINDING sequence D description BINDING => ECO:0000250|UniProtKB:P03300 source Swiss-Prot : SWS_FT_FI1 29) chain B residue 327 type BINDING sequence D description BINDING => ECO:0000250|UniProtKB:P03300 source Swiss-Prot : SWS_FT_FI1 30) chain C residue 234 type BINDING sequence D description BINDING => ECO:0000250|UniProtKB:P03300 source Swiss-Prot : SWS_FT_FI1 31) chain C residue 327 type BINDING sequence D description BINDING => ECO:0000250|UniProtKB:P03300 source Swiss-Prot : SWS_FT_FI1 32) chain D residue 234 type BINDING sequence D description BINDING => ECO:0000250|UniProtKB:P03300 source Swiss-Prot : SWS_FT_FI1 33) chain D residue 327 type BINDING sequence D description BINDING => ECO:0000250|UniProtKB:P03300 source Swiss-Prot : SWS_FT_FI1

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