eF-site ID 1t3n_2-B
PDB Code 1t3n
Model 2
Chain B

click to enlarge
Title Structure of the catalytic core of DNA polymerase Iota in complex with DNA and dTTP
Classification replication/DNA
Compound Template DNA strand
Source null (1T3N)
Sequence B:  SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTC
NYEARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMS
YKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSD
ELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREA
MYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESC
QHLIHSLNHIKEIPGIGYKTAKCLEALGINSVRDLQTFSP
KILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEED
SFKKCSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLII
RRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDI
LMKLFRNMVNVKMPFHLTLLSVCFCNLK
Description (1)  polymerase (DNA directed) iota/DNA Complex


Functional site

1) chain B
residue 454
type
sequence D
description BINDING SITE FOR RESIDUE MG B 869
source : AC1

2) chain B
residue 455
type
sequence L
description BINDING SITE FOR RESIDUE MG B 869
source : AC1

3) chain B
residue 546
type
sequence D
description BINDING SITE FOR RESIDUE MG B 869
source : AC1

4) chain B
residue 454
type
sequence D
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

5) chain B
residue 455
type
sequence L
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

6) chain B
residue 456
type
sequence D
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

7) chain B
residue 457
type
sequence C
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

8) chain B
residue 458
type
sequence F
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

9) chain B
residue 459
type
sequence Y
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

10) chain B
residue 484
type
sequence V
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

11) chain B
residue 485
type
sequence T
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

12) chain B
residue 488
type
sequence Y
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

13) chain B
residue 491
type
sequence R
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

14) chain B
residue 498
type
sequence L
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

15) chain B
residue 546
type
sequence D
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

16) chain B
residue 634
type
sequence K
description BINDING SITE FOR RESIDUE TTP B 868
source : AC2

17) chain B
residue 572
type ACT_SITE
sequence T
description Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00216
source Swiss-Prot : SWS_FT_FI1

18) chain B
residue 479
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:27555320, ECO:0007744|PDB:5KT5
source Swiss-Prot : SWS_FT_FI2

19) chain B
residue 480
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:27555320, ECO:0007744|PDB:5KT5
source Swiss-Prot : SWS_FT_FI2

20) chain B
residue 571
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:27555320, ECO:0007744|PDB:5KT5
source Swiss-Prot : SWS_FT_FI2

21) chain B
residue 484
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:15254543, ECO:0007744|PDB:1T3N
source Swiss-Prot : SWS_FT_FI3

22) chain B
residue 516
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:15254543, ECO:0007744|PDB:1T3N
source Swiss-Prot : SWS_FT_FI3


Display surface

Download
Links