eF-site ID 1smy-P PDB Code 1smy Chain P click to enlarge Title Structural basis for transcription regulation by alarmone ppGpp Classification TRANSFERASE Compound DNA-directed RNA polymerase alpha chain Source ORGANISM_SCIENTIFIC: Thermus thermophilus; Sequence P:  KISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAI KKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDP KTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLR LVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRF KFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSR TARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQE PVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEE LEKALSKLSEREAMVLKLRKGLIDGEEVGAFFGVTRERIR QIENKALRKLKYHESRTRKLRDFLD Description Functional site 1) chain P residue 154 type sequence K description BINDING SITE FOR RESIDUE MG A 9329 source : BC1 2) chain P residue 158 type sequence E description BINDING SITE FOR RESIDUE MG A 9329 source : BC1 3) chain P residue 161 type sequence Q description BINDING SITE FOR RESIDUE MG A 9329 source : BC1 4) chain P residue 263 type sequence H description BINDING SITE FOR RESIDUE MG C 9259 source : HC1 5) chain P residue 266 type sequence E description BINDING SITE FOR RESIDUE MG C 9259 source : HC1 6) chain P residue 263 type sequence H description BINDING SITE FOR RESIDUE MG C 9411 source : LC9 7) chain P residue 170 type sequence H description BINDING SITE FOR RESIDUE MG D 9351 source : WC7 8) chain P residue 226 type sequence K description BINDING SITE FOR RESIDUE MG D 9391 source : YC7

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