eF-site ID 1smy-B PDB Code 1smy Chain B click to enlarge Title Structural basis for transcription regulation by alarmone ppGpp Classification TRANSFERASE Compound DNA-directed RNA polymerase alpha chain Source ORGANISM_SCIENTIFIC: Thermus thermophilus; Sequence B:  MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPL RRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIIL NLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADV EIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKD RINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIW TDGSVTPLEALNQAVEILREHLTYFSNPQ Description Functional site 1) chain B residue 65 type sequence F description BINDING SITE FOR RESIDUE MG B 9228 source : DC1 2) chain B residue 66 type sequence S description BINDING SITE FOR RESIDUE MG B 9228 source : DC1 3) chain B residue 67 type sequence T description BINDING SITE FOR RESIDUE MG B 9228 source : DC1 4) chain B residue 74 type sequence D description BINDING SITE FOR RESIDUE MG B 9228 source : DC1 5) chain B residue 229 type sequence Q description BINDING SITE FOR RESIDUE MG B 9230 source : DC2 6) chain B residue 73 type sequence E description BINDING SITE FOR RESIDUE MG B 9235 source : DC3 7) chain B residue 77 type sequence E description BINDING SITE FOR RESIDUE MG B 9235 source : DC3 8) chain B residue 78 type sequence I description BINDING SITE FOR RESIDUE MG B 9235 source : DC3 9) chain B residue 146 type sequence R description BINDING SITE FOR RESIDUE MG B 9256 source : DC4 10) chain B residue 23 type sequence F description BINDING SITE FOR RESIDUE MG B 9260 source : DC5 11) chain B residue 196 type sequence T description BINDING SITE FOR RESIDUE MG B 9260 source : DC5 12) chain B residue 197 type sequence L description BINDING SITE FOR RESIDUE MG B 9260 source : DC5 13) chain B residue 198 type sequence R description BINDING SITE FOR RESIDUE MG B 9260 source : DC5 14) chain B residue 63 type sequence H description BINDING SITE FOR RESIDUE MG B 9280 source : DC6 15) chain B residue 65 type sequence F description BINDING SITE FOR RESIDUE MG B 9280 source : DC6 16) chain B residue 66 type sequence S description BINDING SITE FOR RESIDUE MG B 9280 source : DC6 17) chain B residue 188 type sequence Q description BINDING SITE FOR RESIDUE MG B 9281 source : DC7 18) chain B residue 152 type sequence P description BINDING SITE FOR RESIDUE MG B 9306 source : DC8 19) chain B residue 93 type sequence S description BINDING SITE FOR RESIDUE MG B 9311 source : DC9 20) chain B residue 94 type sequence L description BINDING SITE FOR RESIDUE MG B 9311 source : DC9 21) chain B residue 119 type sequence D description BINDING SITE FOR RESIDUE MG B 9311 source : DC9 22) chain B residue 180 type sequence Q description BINDING SITE FOR RESIDUE MG B 9412 source : EC1 23) chain B residue 182 type sequence E description BINDING SITE FOR RESIDUE MG B 9412 source : EC1 24) chain B residue 95 type sequence Q description BINDING SITE FOR RESIDUE MG B 9413 source : EC2 25) chain B residue 145 type sequence D description BINDING SITE FOR RESIDUE MG B 9413 source : EC2 26) chain B residue 146 type sequence R description BINDING SITE FOR RESIDUE MG B 9413 source : EC2 27) chain B residue 189 type sequence R description BINDING SITE FOR RESIDUE MG B 9420 source : EC3 28) chain B residue 219 type sequence R description BINDING SITE FOR RESIDUE MG B 9426 source : EC4 29) chain B residue 29 type sequence E description BINDING SITE FOR RESIDUE MG B 9427 source : EC5 30) chain B residue 30 type sequence R description BINDING SITE FOR RESIDUE MG B 9427 source : EC5 31) chain B residue 191 type sequence D description BINDING SITE FOR RESIDUE MG B 9427 source : EC5 32) chain B residue 192 type sequence L description BINDING SITE FOR RESIDUE MG B 9427 source : EC5 33) chain B residue 193 type sequence D description BINDING SITE FOR RESIDUE MG B 9427 source : EC5 34) chain B residue 71 type sequence V description BINDING SITE FOR RESIDUE MG B 9458 source : EC7 35) chain B residue 72 type sequence K description BINDING SITE FOR RESIDUE MG B 9458 source : EC7 36) chain B residue 206 type sequence T description BINDING SITE FOR RESIDUE MG B 9485 source : EC8 37) chain B residue 208 type sequence L description BINDING SITE FOR RESIDUE MG B 9485 source : EC8 38) chain B residue 182 type sequence E description BINDING SITE FOR RESIDUE MG B 9491 source : FC1 39) chain B residue 15 type sequence T description BINDING SITE FOR RESIDUE MG B 9552 source : FC3 40) chain B residue 208 type sequence L description BINDING SITE FOR RESIDUE MG B 9552 source : FC3 41) chain B residue 185 type sequence R description BINDING SITE FOR RESIDUE MG D 9527 source : ED4

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