eF-site ID 1smy-B
PDB Code 1smy
Chain B

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Title Structural basis for transcription regulation by alarmone ppGpp
Classification TRANSFERASE
Compound DNA-directed RNA polymerase alpha chain
Source ORGANISM_SCIENTIFIC: Thermus thermophilus;
Sequence B:  MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPL
RRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIIL
NLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADV
EIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKD
RINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIW
TDGSVTPLEALNQAVEILREHLTYFSNPQ
Description


Functional site

1) chain B
residue 65
type
sequence F
description BINDING SITE FOR RESIDUE MG B 9228
source : DC1

2) chain B
residue 66
type
sequence S
description BINDING SITE FOR RESIDUE MG B 9228
source : DC1

3) chain B
residue 67
type
sequence T
description BINDING SITE FOR RESIDUE MG B 9228
source : DC1

4) chain B
residue 74
type
sequence D
description BINDING SITE FOR RESIDUE MG B 9228
source : DC1

5) chain B
residue 229
type
sequence Q
description BINDING SITE FOR RESIDUE MG B 9230
source : DC2

6) chain B
residue 73
type
sequence E
description BINDING SITE FOR RESIDUE MG B 9235
source : DC3

7) chain B
residue 77
type
sequence E
description BINDING SITE FOR RESIDUE MG B 9235
source : DC3

8) chain B
residue 78
type
sequence I
description BINDING SITE FOR RESIDUE MG B 9235
source : DC3

9) chain B
residue 146
type
sequence R
description BINDING SITE FOR RESIDUE MG B 9256
source : DC4

10) chain B
residue 23
type
sequence F
description BINDING SITE FOR RESIDUE MG B 9260
source : DC5

11) chain B
residue 196
type
sequence T
description BINDING SITE FOR RESIDUE MG B 9260
source : DC5

12) chain B
residue 197
type
sequence L
description BINDING SITE FOR RESIDUE MG B 9260
source : DC5

13) chain B
residue 198
type
sequence R
description BINDING SITE FOR RESIDUE MG B 9260
source : DC5

14) chain B
residue 63
type
sequence H
description BINDING SITE FOR RESIDUE MG B 9280
source : DC6

15) chain B
residue 65
type
sequence F
description BINDING SITE FOR RESIDUE MG B 9280
source : DC6

16) chain B
residue 66
type
sequence S
description BINDING SITE FOR RESIDUE MG B 9280
source : DC6

17) chain B
residue 188
type
sequence Q
description BINDING SITE FOR RESIDUE MG B 9281
source : DC7

18) chain B
residue 152
type
sequence P
description BINDING SITE FOR RESIDUE MG B 9306
source : DC8

19) chain B
residue 93
type
sequence S
description BINDING SITE FOR RESIDUE MG B 9311
source : DC9

20) chain B
residue 94
type
sequence L
description BINDING SITE FOR RESIDUE MG B 9311
source : DC9

21) chain B
residue 119
type
sequence D
description BINDING SITE FOR RESIDUE MG B 9311
source : DC9

22) chain B
residue 180
type
sequence Q
description BINDING SITE FOR RESIDUE MG B 9412
source : EC1

23) chain B
residue 182
type
sequence E
description BINDING SITE FOR RESIDUE MG B 9412
source : EC1

24) chain B
residue 95
type
sequence Q
description BINDING SITE FOR RESIDUE MG B 9413
source : EC2

25) chain B
residue 145
type
sequence D
description BINDING SITE FOR RESIDUE MG B 9413
source : EC2

26) chain B
residue 146
type
sequence R
description BINDING SITE FOR RESIDUE MG B 9413
source : EC2

27) chain B
residue 189
type
sequence R
description BINDING SITE FOR RESIDUE MG B 9420
source : EC3

28) chain B
residue 219
type
sequence R
description BINDING SITE FOR RESIDUE MG B 9426
source : EC4

29) chain B
residue 29
type
sequence E
description BINDING SITE FOR RESIDUE MG B 9427
source : EC5

30) chain B
residue 30
type
sequence R
description BINDING SITE FOR RESIDUE MG B 9427
source : EC5

31) chain B
residue 191
type
sequence D
description BINDING SITE FOR RESIDUE MG B 9427
source : EC5

32) chain B
residue 192
type
sequence L
description BINDING SITE FOR RESIDUE MG B 9427
source : EC5

33) chain B
residue 193
type
sequence D
description BINDING SITE FOR RESIDUE MG B 9427
source : EC5

34) chain B
residue 71
type
sequence V
description BINDING SITE FOR RESIDUE MG B 9458
source : EC7

35) chain B
residue 72
type
sequence K
description BINDING SITE FOR RESIDUE MG B 9458
source : EC7

36) chain B
residue 206
type
sequence T
description BINDING SITE FOR RESIDUE MG B 9485
source : EC8

37) chain B
residue 208
type
sequence L
description BINDING SITE FOR RESIDUE MG B 9485
source : EC8

38) chain B
residue 182
type
sequence E
description BINDING SITE FOR RESIDUE MG B 9491
source : FC1

39) chain B
residue 15
type
sequence T
description BINDING SITE FOR RESIDUE MG B 9552
source : FC3

40) chain B
residue 208
type
sequence L
description BINDING SITE FOR RESIDUE MG B 9552
source : FC3

41) chain B
residue 185
type
sequence R
description BINDING SITE FOR RESIDUE MG D 9527
source : ED4


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