eF-site ID 1smy-A PDB Code 1smy Chain A click to enlarge Title Structural basis for transcription regulation by alarmone ppGpp Classification TRANSFERASE Compound DNA-directed RNA polymerase alpha chain Source ORGANISM_SCIENTIFIC: Thermus thermophilus; Sequence A:  MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPL RRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIIL NLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADV EIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKD RINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIW TDGSVTPLEALNQAVEILREHLTYFSNPQ Description Functional site 1) chain A residue 52 type sequence A description BINDING SITE FOR RESIDUE MG A 9209 source : AC1 2) chain A residue 83 type sequence K description BINDING SITE FOR RESIDUE MG A 9209 source : AC1 3) chain A residue 85 type sequence L description BINDING SITE FOR RESIDUE MG A 9209 source : AC1 4) chain A residue 170 type sequence V description BINDING SITE FOR RESIDUE MG A 9209 source : AC1 5) chain A residue 159 type sequence K description BINDING SITE FOR RESIDUE MG A 9212 source : AC2 6) chain A residue 160 type sequence D description BINDING SITE FOR RESIDUE MG A 9212 source : AC2 7) chain A residue 161 type sequence R description BINDING SITE FOR RESIDUE MG A 9212 source : AC2 8) chain A residue 162 type sequence I description BINDING SITE FOR RESIDUE MG A 9212 source : AC2 9) chain A residue 74 type sequence D description BINDING SITE FOR RESIDUE MG A 9224 source : AC3 10) chain A residue 88 type sequence R description BINDING SITE FOR RESIDUE MG A 9227 source : AC4 11) chain A residue 121 type sequence E description BINDING SITE FOR RESIDUE MG A 9227 source : AC4 12) chain A residue 122 type sequence I description BINDING SITE FOR RESIDUE MG A 9227 source : AC4 13) chain A residue 123 type sequence M description BINDING SITE FOR RESIDUE MG A 9227 source : AC4 14) chain A residue 212 type sequence N description BINDING SITE FOR RESIDUE MG A 9254 source : AC5 15) chain A residue 59 type sequence E description BINDING SITE FOR RESIDUE MG A 9273 source : AC7 16) chain A residue 139 type sequence N description BINDING SITE FOR RESIDUE MG A 9273 source : AC7 17) chain A residue 107 type sequence K description BINDING SITE FOR RESIDUE MG A 9295 source : AC8 18) chain A residue 113 type sequence D description BINDING SITE FOR RESIDUE MG A 9295 source : AC8 19) chain A residue 200 type sequence W description BINDING SITE FOR RESIDUE MG A 9327 source : AC9 20) chain A residue 93 type sequence S description BINDING SITE FOR RESIDUE MG A 9334 source : BC2 21) chain A residue 175 type sequence R description BINDING SITE FOR RESIDUE MG A 9365 source : BC3 22) chain A residue 202 type sequence D description BINDING SITE FOR RESIDUE MG A 9365 source : BC3 23) chain A residue 188 type sequence Q description BINDING SITE FOR RESIDUE MG A 9368 source : BC4 24) chain A residue 189 type sequence R description BINDING SITE FOR RESIDUE MG A 9368 source : BC4 25) chain A residue 192 type sequence L description BINDING SITE FOR RESIDUE MG A 9368 source : BC4 26) chain A residue 91 type sequence N description BINDING SITE FOR RESIDUE MG A 9423 source : BC6 27) chain A residue 93 type sequence S description BINDING SITE FOR RESIDUE MG A 9423 source : BC6 28) chain A residue 18 type sequence R description BINDING SITE FOR RESIDUE MG A 9442 source : BC8 29) chain A residue 88 type sequence R description BINDING SITE FOR RESIDUE MG A 9442 source : BC8 30) chain A residue 90 type sequence L description BINDING SITE FOR RESIDUE MG A 9442 source : BC8 31) chain A residue 121 type sequence E description BINDING SITE FOR RESIDUE MG A 9442 source : BC8 32) chain A residue 191 type sequence D description BINDING SITE FOR RESIDUE MG A 9462 source : BC9 33) chain A residue 176 type sequence R description BINDING SITE FOR RESIDUE MG A 9464 source : CC1 34) chain A residue 133 type sequence E description BINDING SITE FOR RESIDUE MG A 9473 source : CC2 35) chain A residue 134 type sequence E description BINDING SITE FOR RESIDUE MG A 9486 source : CC3 36) chain A residue 159 type sequence K description BINDING SITE FOR RESIDUE MG A 9520 source : CC5 37) chain A residue 106 type sequence P description BINDING SITE FOR RESIDUE MG A 9521 source : CC6 38) chain A residue 91 type sequence N description BINDING SITE FOR RESIDUE MG A 9543 source : CC7 39) chain A residue 224 type sequence Y description BINDING SITE FOR RESIDUE MG A 9555 source : CC9 40) chain A residue 13 type sequence V description BINDING SITE FOR RESIDUE MG B 9230 source : DC2 41) chain A residue 41 type sequence R description BINDING SITE FOR RESIDUE MG C 9438 source : MC5 42) chain A residue 16 type sequence Q description BINDING SITE FOR RESIDUE MG D 9315 source : VC2

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