eF-site ID 1smy-A
PDB Code 1smy
Chain A

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Title Structural basis for transcription regulation by alarmone ppGpp
Classification TRANSFERASE
Compound DNA-directed RNA polymerase alpha chain
Source ORGANISM_SCIENTIFIC: Thermus thermophilus;
Sequence A:  MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPL
RRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIIL
NLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADV
EIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKD
RINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIW
TDGSVTPLEALNQAVEILREHLTYFSNPQ
Description


Functional site

1) chain A
residue 52
type
sequence A
description BINDING SITE FOR RESIDUE MG A 9209
source : AC1

2) chain A
residue 83
type
sequence K
description BINDING SITE FOR RESIDUE MG A 9209
source : AC1

3) chain A
residue 85
type
sequence L
description BINDING SITE FOR RESIDUE MG A 9209
source : AC1

4) chain A
residue 170
type
sequence V
description BINDING SITE FOR RESIDUE MG A 9209
source : AC1

5) chain A
residue 159
type
sequence K
description BINDING SITE FOR RESIDUE MG A 9212
source : AC2

6) chain A
residue 160
type
sequence D
description BINDING SITE FOR RESIDUE MG A 9212
source : AC2

7) chain A
residue 161
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9212
source : AC2

8) chain A
residue 162
type
sequence I
description BINDING SITE FOR RESIDUE MG A 9212
source : AC2

9) chain A
residue 74
type
sequence D
description BINDING SITE FOR RESIDUE MG A 9224
source : AC3

10) chain A
residue 88
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9227
source : AC4

11) chain A
residue 121
type
sequence E
description BINDING SITE FOR RESIDUE MG A 9227
source : AC4

12) chain A
residue 122
type
sequence I
description BINDING SITE FOR RESIDUE MG A 9227
source : AC4

13) chain A
residue 123
type
sequence M
description BINDING SITE FOR RESIDUE MG A 9227
source : AC4

14) chain A
residue 212
type
sequence N
description BINDING SITE FOR RESIDUE MG A 9254
source : AC5

15) chain A
residue 59
type
sequence E
description BINDING SITE FOR RESIDUE MG A 9273
source : AC7

16) chain A
residue 139
type
sequence N
description BINDING SITE FOR RESIDUE MG A 9273
source : AC7

17) chain A
residue 107
type
sequence K
description BINDING SITE FOR RESIDUE MG A 9295
source : AC8

18) chain A
residue 113
type
sequence D
description BINDING SITE FOR RESIDUE MG A 9295
source : AC8

19) chain A
residue 200
type
sequence W
description BINDING SITE FOR RESIDUE MG A 9327
source : AC9

20) chain A
residue 93
type
sequence S
description BINDING SITE FOR RESIDUE MG A 9334
source : BC2

21) chain A
residue 175
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9365
source : BC3

22) chain A
residue 202
type
sequence D
description BINDING SITE FOR RESIDUE MG A 9365
source : BC3

23) chain A
residue 188
type
sequence Q
description BINDING SITE FOR RESIDUE MG A 9368
source : BC4

24) chain A
residue 189
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9368
source : BC4

25) chain A
residue 192
type
sequence L
description BINDING SITE FOR RESIDUE MG A 9368
source : BC4

26) chain A
residue 91
type
sequence N
description BINDING SITE FOR RESIDUE MG A 9423
source : BC6

27) chain A
residue 93
type
sequence S
description BINDING SITE FOR RESIDUE MG A 9423
source : BC6

28) chain A
residue 18
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9442
source : BC8

29) chain A
residue 88
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9442
source : BC8

30) chain A
residue 90
type
sequence L
description BINDING SITE FOR RESIDUE MG A 9442
source : BC8

31) chain A
residue 121
type
sequence E
description BINDING SITE FOR RESIDUE MG A 9442
source : BC8

32) chain A
residue 191
type
sequence D
description BINDING SITE FOR RESIDUE MG A 9462
source : BC9

33) chain A
residue 176
type
sequence R
description BINDING SITE FOR RESIDUE MG A 9464
source : CC1

34) chain A
residue 133
type
sequence E
description BINDING SITE FOR RESIDUE MG A 9473
source : CC2

35) chain A
residue 134
type
sequence E
description BINDING SITE FOR RESIDUE MG A 9486
source : CC3

36) chain A
residue 159
type
sequence K
description BINDING SITE FOR RESIDUE MG A 9520
source : CC5

37) chain A
residue 106
type
sequence P
description BINDING SITE FOR RESIDUE MG A 9521
source : CC6

38) chain A
residue 91
type
sequence N
description BINDING SITE FOR RESIDUE MG A 9543
source : CC7

39) chain A
residue 224
type
sequence Y
description BINDING SITE FOR RESIDUE MG A 9555
source : CC9

40) chain A
residue 13
type
sequence V
description BINDING SITE FOR RESIDUE MG B 9230
source : DC2

41) chain A
residue 41
type
sequence R
description BINDING SITE FOR RESIDUE MG C 9438
source : MC5

42) chain A
residue 16
type
sequence Q
description BINDING SITE FOR RESIDUE MG D 9315
source : VC2


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