|
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eF-site ID
|
1si7-A |
|
PDB Code
|
1si7 |
|
Chain
|
A |
|
click to enlarge
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Title
|
Structure of E. coli tRNA psi 13 pseudouridine synthase TruD |
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Classification
|
LYASE |
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Compound
|
tRNA pseudouridine synthase D |
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Source
|
Escherichia coli (strain K12) (TRUD_ECOLI) |
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Sequence
|
A: |
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGE
GEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKD
KHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRK
LRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYF
GAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARS
ALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEE
LAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVA
AETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEI
RFWLPAGSFATSVVRELINT
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Description
|
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Functional site
|
|
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1)
|
chain |
A |
| residue |
77-90 |
| type |
prosite |
| sequence |
GQKDKHAVTEQWLC
|
| description |
UPF0024 Uncharacterized protein family UPF0024 signature. GqKDKhAVTeQwLC
|
| source |
prosite : PS01268
|
|
|
2)
|
chain |
A |
| residue |
31 |
| type |
ACT_SITE |
| sequence |
E
|
| description |
Proton acceptor => ECO:0000255
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
3)
|
chain |
A |
| residue |
80 |
| type |
ACT_SITE |
| sequence |
D
|
| description |
Nucleophile => ECO:0000269|PubMed:19664587
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
4)
|
chain |
A |
| residue |
27 |
| type |
BINDING |
| sequence |
F
|
| description |
BINDING => ECO:0000250
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
5)
|
chain |
A |
| residue |
329 |
| type |
BINDING |
| sequence |
F
|
| description |
BINDING => ECO:0000250
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
6)
|
chain |
A |
| residue |
129 |
| type |
BINDING |
| sequence |
N
|
| description |
BINDING => ECO:0000305
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
|
|