eF-site ID 1r9s-RT
PDB Code 1r9s
Chain R, T

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Title RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE
Classification TRANSCRIPTION/DNA-RNA HYBRID
Compound RNA strand
Source ORGANISM_COMMON: baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae;
Sequence R:  AUCGAGAGGA
T:  ACGATCCTCTCGAT
Description (1)  DNA-directed RNA polymerase II largest subunit (E.C.2.7.7.6)/DNA-directed RNA polymerase II 140 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerase II 45 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerase II 14.2 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerase II 13.6 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (E.C.2.7.7.6)/DNA/RNA Complex


Functional site

1) chain R
residue 10
type
ligand
sequence A
description BINDING SITE FOR RESIDUE MG R 2001
source : AC9

2) chain R
residue 10
type
ligand
sequence A
description BINDING SITE FOR RESIDUE UTP R 3000
source : BC2

3) chain T
residue 4
type
ligand
sequence A
description BINDING SITE FOR RESIDUE UTP R 3000
source : BC2

4) chain R
residue 10
type binding
ligand UTP: URIDINE 5'-TRIPHOSPHATE
sequence A
description URIDINE 5'-TRIPHOSPHATE binding site
source pdb_hetatom : UTP_1r9s_R_3000

5) chain T
residue 4-5
type binding
ligand UTP: URIDINE 5'-TRIPHOSPHATE
sequence AT
description URIDINE 5'-TRIPHOSPHATE binding site
source pdb_hetatom : UTP_1r9s_R_3000


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