eF-site ID 1r9s-B PDB Code 1r9s Chain B click to enlarge Title RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE Classification TRANSCRIPTION/DNA-RNA HYBRID Compound RNA strand Source ORGANISM_COMMON: baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; Sequence B:  DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL QDIICEDSTLIISFGKIYVTKPMVNESDGVTHALYPQEAR LRNLTYSSGLFVDVKKKVFIGRLPIMLRSKNCYLSEATES DLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFK KAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR TIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVND WQMLEMLKPCVEDGFVIQDRETALDFIGKEKRIQYAKDIL QKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQD DRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTV ELAINAKTITSGLKYALATGNWGAGVSQVLNRYTYSSTLS HLRRTNTPIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATR VFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDI REKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIA KLMATEYQDEYTWSSLLNEGLVEYIDAEEEESILIAMQPE DLEPAEADVDPAKRIRVSHHATTFTHCEIHPSMILGVAAS IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMAN ILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYN QEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETF EKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGK TTPISSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVR VRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIV PDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPF TDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFF GPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGG LRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICG LMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQEL MAMNITPRLYTDRSRDF Description Functional site 1) chain B residue 1163 type sequence C description BINDING SITE FOR RESIDUE ZN B 1307 source : AC3 2) chain B residue 1166 type sequence C description BINDING SITE FOR RESIDUE ZN B 1307 source : AC3 3) chain B residue 1182 type sequence C description BINDING SITE FOR RESIDUE ZN B 1307 source : AC3 4) chain B residue 1185 type sequence C description BINDING SITE FOR RESIDUE ZN B 1307 source : AC3 5) chain B residue 837 type sequence D description BINDING SITE FOR RESIDUE MG A 2002 source : BC1 6) chain B residue 1020 type sequence R description BINDING SITE FOR RESIDUE MG A 2002 source : BC1 7) chain B residue 766 type sequence R description BINDING SITE FOR RESIDUE UTP R 3000 source : BC2 8) chain B residue 769 type sequence Y description BINDING SITE FOR RESIDUE UTP R 3000 source : BC2 9) chain B residue 987 type sequence K description BINDING SITE FOR RESIDUE UTP R 3000 source : BC2 10) chain B residue 1020 type sequence R description BINDING SITE FOR RESIDUE UTP R 3000 source : BC2 11) chain B residue 837 type catalytic sequence D description 788 source MCSA : MCSA1 12) chain B residue 1185 type BINDING sequence C description source Swiss-Prot : SWS_FT_FI2 13) chain B residue 977-989 type prosite sequence GDKFASRHGQKGT description RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT source prosite : PS01166

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