eF-site ID 1r9s-A PDB Code 1r9s Chain A click to enlarge Title RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE Classification TRANSCRIPTION/DNA-RNA HYBRID Compound RNA strand Source ORGANISM_COMMON: baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; Sequence A:  VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETM DETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHF GHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNEL MRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSLVSRGGC GNTQPTIRKDGLKLVGSWKLRVLSTEEILNIFKHISVKDF TSLGFNEVFSRPEWMILTCLPVPPPPVRPSEDDLTFKLAD ILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDI AGQPQAPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRN GPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVER HIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSV TSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP QSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVP DWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEG TTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVT REKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGP TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESF EDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGS FINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSP ESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAET GYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMD AAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLE SGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANW PLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQ ENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQE YRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGE PATQMTLKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGH AADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIP EDEEIIQLHFSLQQSPWLLRLELDRAAMNDKDLTMGQVGE RIKQTFKNDLFVIWSEDNDEKLIIRCRVVAEEDHMLKKIE NTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEW VLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAG RAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSV TRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGV SENVILGQMAPIGTGAFDVMI Description Functional site 1) chain A residue 110 type sequence C description BINDING SITE FOR RESIDUE ZN A 1734 source : AC1 2) chain A residue 167 type sequence C description BINDING SITE FOR RESIDUE ZN A 1734 source : AC1 3) chain A residue 67 type sequence C description BINDING SITE FOR RESIDUE ZN A 1735 source : AC2 4) chain A residue 70 type sequence C description BINDING SITE FOR RESIDUE ZN A 1735 source : AC2 5) chain A residue 77 type sequence C description BINDING SITE FOR RESIDUE ZN A 1735 source : AC2 6) chain A residue 80 type sequence H description BINDING SITE FOR RESIDUE ZN A 1735 source : AC2 7) chain A residue 481 type sequence D description BINDING SITE FOR RESIDUE MG R 2001 source : AC9 8) chain A residue 483 type sequence D description BINDING SITE FOR RESIDUE MG R 2001 source : AC9 9) chain A residue 485 type sequence D description BINDING SITE FOR RESIDUE MG R 2001 source : AC9 10) chain A residue 481 type sequence D description BINDING SITE FOR RESIDUE MG A 2002 source : BC1 11) chain A residue 483 type sequence D description BINDING SITE FOR RESIDUE MG A 2002 source : BC1 12) chain A residue 446 type sequence R description BINDING SITE FOR RESIDUE UTP R 3000 source : BC2 13) chain A residue 483 type sequence D description BINDING SITE FOR RESIDUE UTP R 3000 source : BC2 14) chain A residue 483 type catalytic sequence D description 788 source MCSA : MCSA1 15) chain A residue 485 type catalytic sequence D description 788 source MCSA : MCSA1 16) chain A residue 483 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1 17) chain A residue 485 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1 18) chain A residue 107 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 19) chain A residue 110 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 20) chain A residue 148 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 21) chain A residue 167 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 22) chain A residue 481 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1

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