eF-site ID 1qyp_1-A
PDB Code 1qyp
Model 1
Chain A

click to enlarge
Title THERMOCOCCUS CELER RPB9, NMR, 25 STRUCTURES
Classification TRANSCRIPTION
Compound RNA POLYMERASE II
Source Thermococcus celer (RPOM_THECE)
Sequence A:  GSHMEQDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPS
TIFYKCTKCGHTWRSYE
Description (1)  RNA POLYMERASE II


Functional site

1) chain A
residue 18
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 58
source : AC1

2) chain A
residue 21
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 58
source : AC1

3) chain A
residue 23
type
sequence N
description BINDING SITE FOR RESIDUE ZN A 58
source : AC1

4) chain A
residue 46
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 58
source : AC1

5) chain A
residue 49
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 58
source : AC1

6) chain A
residue 14-54
type ZN_FING
sequence TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW
R
description TFIIS-type => ECO:0000255|PROSITE-ProRule:PRU00472
source Swiss-Prot : SWS_FT_FI1

7) chain A
residue 18-53
type prosite
sequence CPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW
description ZF_TFIIS_1 Zinc finger TFIIS-type signature. CpkCgndtaywweMQTRAgDEPstifykCtk...CghtW
source prosite : PS00466

8) chain A
residue 18
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00472, ECO:0000269|PubMed:9634694
source Swiss-Prot : SWS_FT_FI2

9) chain A
residue 21
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00472, ECO:0000269|PubMed:9634694
source Swiss-Prot : SWS_FT_FI2

10) chain A
residue 46
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00472, ECO:0000269|PubMed:9634694
source Swiss-Prot : SWS_FT_FI2

11) chain A
residue 49
type BINDING
sequence C
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00472, ECO:0000269|PubMed:9634694
source Swiss-Prot : SWS_FT_FI2


Display surface

Download
Links