eF-site ID 1qle-A
PDB Code 1qle
Chain A
Title CRYO-STRUCTURE OF THE PARACOCCUS DENITRIFICANS FOUR-SUBUNIT CYTOCHROME C OXIDASE IN THE COMPLETELY OXIDIZED STATE COMPLEXED WITH AN ANTIBODY FV FRAGMENT
Classification OXIDOREDUCTASE/IMMUNE SYSTEM
Compound CYTOCHROME C OXIDASE POLYPEPTIDE I-BETA
Source ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS;
Sequence A:  GFFTRWFMSTNHKDIGILYLFTAGIVGLISVCFTVYMRME
LQHPGVQYMCLEGARLIADASAECTPNGHLWNVMITYHGV
LMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRLNNLSYW
MYVCGVALGVASLLAPGGNDQMGSGVGWVLYPPLSTTEAG
YSMDLAIFAVHVSGASSILGAINIITTFLNMRAPGMTLFK
VPLFAWSVFITAWLILLSLPVLAGAITMLLMDRNFGTQFF
DPAGGGDPVLYQHILWFFGHPEVYIIILPGFGIISHVIST
FAKKPIFGYLPMVLAMAAIGILGFVVWAHHMYTAGMSLTQ
QAYFMLATMTIAVPTGIKVFSWIATMWGGSIEFKTPMLWA
FGFLFLFTVGGVTGVVLSQAPLDRVYHDTYYVVAHFHYVM
SLGAVFGIFAGVYYWIGKMSGRQYPEWAGQLHFWMMFIGS
NLIFFPQHFLGRQGMPRRYIDYPVEFAYWNNISSIGAYIS
FASFLFFIGIVFYTLFAGKRVNVPNYWNEHADTLEWTLPS
PPPEHTFETLPKREDWDR
Description


Functional site

1) chain A
residue 276
type
sequence H
description BINDING SITE FOR RESIDUE CU Y 2
source : AC1

2) chain A
residue 325
type
sequence H
description BINDING SITE FOR RESIDUE CU Y 2
source : AC1

3) chain A
residue 326
type
sequence H
description BINDING SITE FOR RESIDUE CU Y 2
source : AC1

4) chain A
residue 56
type
sequence E
description BINDING SITE FOR RESIDUE CA Z 1
source : AC2

5) chain A
residue 59
type
sequence H
description BINDING SITE FOR RESIDUE CA Z 1
source : AC2

6) chain A
residue 60
type
sequence P
description BINDING SITE FOR RESIDUE CA Z 1
source : AC2

7) chain A
residue 61
type
sequence G
description BINDING SITE FOR RESIDUE CA Z 1
source : AC2

8) chain A
residue 63
type
sequence Q
description BINDING SITE FOR RESIDUE CA Z 1
source : AC2

9) chain A
residue 403
type
sequence H
description BINDING SITE FOR RESIDUE MN Z 2
source : AC3

10) chain A
residue 404
type
sequence D
description BINDING SITE FOR RESIDUE MN Z 2
source : AC3

11) chain A
residue 36
type
sequence L
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

12) chain A
residue 39
type
sequence A
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

13) chain A
residue 40
type
sequence G
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

14) chain A
residue 47
type
sequence V
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

15) chain A
residue 50
type
sequence T
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

16) chain A
residue 54
type
sequence R
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

17) chain A
residue 87
type
sequence W
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

18) chain A
residue 91
type
sequence I
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

19) chain A
residue 94
type
sequence H
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

20) chain A
residue 98
type
sequence M
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

21) chain A
residue 103
type
sequence V
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

22) chain A
residue 106
type
sequence A
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

23) chain A
residue 163
type
sequence G
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

24) chain A
residue 164
type
sequence W
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

25) chain A
residue 406
type
sequence Y
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

26) chain A
residue 409
type
sequence V
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

27) chain A
residue 412
type
sequence F
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

28) chain A
residue 413
type
sequence H
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

29) chain A
residue 416
type
sequence M
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

30) chain A
residue 417
type
sequence S
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

31) chain A
residue 421
type
sequence V
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

32) chain A
residue 452
type
sequence M
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

33) chain A
residue 473
type
sequence R
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

34) chain A
residue 474
type
sequence R
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

35) chain A
residue 475
type
sequence Y
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

36) chain A
residue 500
type
sequence F
description BINDING SITE FOR RESIDUE HEA X 1
source : AC4

37) chain A
residue 164
type
sequence W
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

38) chain A
residue 279
type
sequence V
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

39) chain A
residue 280
type
sequence Y
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

40) chain A
residue 325
type
sequence H
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

41) chain A
residue 326
type
sequence H
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

42) chain A
residue 348
type
sequence A
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

43) chain A
residue 351
type
sequence T
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

44) chain A
residue 387
type
sequence G
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

45) chain A
residue 390
type
sequence G
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

46) chain A
residue 391
type
sequence V
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

47) chain A
residue 393
type
sequence L
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

48) chain A
residue 394
type
sequence S
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

49) chain A
residue 399
type
sequence D
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

50) chain A
residue 403
type
sequence H
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

51) chain A
residue 408
type
sequence V
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

52) chain A
residue 411
type
sequence H
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

53) chain A
residue 412
type
sequence F
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

54) chain A
residue 415
type
sequence V
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

55) chain A
residue 473
type
sequence R
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

56) chain A
residue 474
type
sequence R
description BINDING SITE FOR RESIDUE HEA X 2
source : AC5

57) chain A
residue 233
type
sequence L
description BINDING SITE FOR RESIDUE PC1 P 2
source : AC7

58) chain A
residue 323
type
sequence W
description BINDING SITE FOR RESIDUE PC1 P 2
source : AC7

59) chain A
residue 336
type
sequence Q
description BINDING SITE FOR RESIDUE PC1 P 2
source : AC7

60) chain A
residue 339
type
sequence Y
description BINDING SITE FOR RESIDUE PC1 P 2
source : AC7

61) chain A
residue 333-364
type TRANSMEM
sequence SLTQQAYFMLATMTIAVPTGIKVFSWIATMWG
description Helical; Name=VIII
source Swiss-Prot : SWS_FT_FI10

62) chain A
residue 370-395
type TRANSMEM
sequence KTPMLWAFGFLFLFTVGGVTGVVLSQ
description Helical; Name=IX
source Swiss-Prot : SWS_FT_FI11

63) chain A
residue 405-437
type TRANSMEM
sequence TYYVVAHFHYVMSLGAVFGIFAGVYYWIGKMSG
description Helical; Name=X
source Swiss-Prot : SWS_FT_FI12

64) chain A
residue 441-469
type TRANSMEM
sequence PEWAGQLHFWMMFIGSNLIFFPQHFLGRQ
description Helical; Name=XI
source Swiss-Prot : SWS_FT_FI13

65) chain A
residue 272-326
type prosite
sequence WFFGHPEVYIIILPGFGIISHVISTFAKKPIFGYLPMVLA
MAAIGILGFVVWAHH
description COX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WFFGHPeVyiiilpgfgiishvistfakkpifgylpmvlamaaigilgfvvwa..HH
source prosite : PS00077

66) chain A
residue 94
type BINDING
sequence H
description axial binding residue
source Swiss-Prot : SWS_FT_FI15

67) chain A
residue 411
type BINDING
sequence H
description axial binding residue
source Swiss-Prot : SWS_FT_FI15

68) chain A
residue 413
type BINDING
sequence H
description axial binding residue
source Swiss-Prot : SWS_FT_FI15

69) chain A
residue 276
type BINDING
sequence H
description
source Swiss-Prot : SWS_FT_FI16

70) chain A
residue 280
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI16

71) chain A
residue 325
type BINDING
sequence H
description
source Swiss-Prot : SWS_FT_FI16

72) chain A
residue 326
type BINDING
sequence H
description
source Swiss-Prot : SWS_FT_FI16

73) chain A
residue 276
type CROSSLNK
sequence H
description 1'-histidyl-3'-tyrosine (His-Tyr)
source Swiss-Prot : SWS_FT_FI17

74) chain A
residue 280
type CROSSLNK
sequence Y
description 1'-histidyl-3'-tyrosine (His-Tyr)
source Swiss-Prot : SWS_FT_FI17

75) chain A
residue 479-514
type TRANSMEM
sequence PVEFAYWNNISSIGAYISFASFLFFIGIVFYTLFAG
description Helical; Name=XII
source Swiss-Prot : SWS_FT_FI14

76) chain A
residue 263-299
type TRANSMEM
sequence DPVLYQHILWFFGHPEVYIIILPGFGIISHVISTFAK
description Helical; Name=VI
source Swiss-Prot : SWS_FT_FI8

77) chain A
residue 304-331
type TRANSMEM
sequence GYLPMVLAMAAIGILGFVVWAHHMYTAG
description Helical; Name=VII
source Swiss-Prot : SWS_FT_FI9

78) chain A
residue 177-206
type TRANSMEM
sequence YSMDLAIFAVHVSGASSILGAINIITTFLN
description Helical; Name=IV
source Swiss-Prot : SWS_FT_FI6

79) chain A
residue 218-251
type TRANSMEM
sequence PLFAWSVFITAWLILLSLPVLAGAITMLLMDRNF
description Helical; Name=V
source Swiss-Prot : SWS_FT_FI7


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