eF-site ID 1qgc-12345A
PDB Code 1qgc
Chain 1, 2, 3, 4, 5, A

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Title STRUCTURE OF THE COMPLEX OF A FAB FRAGMENT OF A NEUTRALIZING ANTIBODY WITH FOOT AND MOUTH DISEASE VIRUS
Classification Virus/Immune system
Compound PROTEIN (VIRUS CAPSID PROTEIN VP1)
Source ORGANISM_SCIENTIFIC: Foot-and-mouth disease virus - type C; ORGANISM_COMMON: house mouse;
Sequence 1:  TTTTGESADPVTTTVENYGGETQVQRRHHTDVAFVLDRFV
KVTVSDNQHTLDVMQAHKDNIVGALLRAATYYFSDLEIAV
THTGKLTWVPNGAPVSALNNTTNPTAYHKGPVTRLALPYT
APHRVLATAYTGTSFNFGAVKAETITELLVRMKRAELYCP
RPILPIQPTGDRHKQPLVAPAKQ
2:  DKKTEETTLLEDRILTTRNGHTTSTTQSSVGVTFGYATAE
DSTSGPNTSALETRVHQAERFFKMALFDWVPSQNFGHMHK
VVLPHEPKGVYGGLVKSYAYMRNGWDVEVTAVGNQFNGGC
LLVALVPEMGDISDREKYQLTLYPHQFINPRTNMTAHITV
PYVGVNRYDQYKQHRPWTLVVMVVAPLTTNTAGAQQIKVY
ANIAPTNVHVAGELPSKE
3:  GIFPVACSDGYGNMVTTDPKTADPAYGKVYNPPRTALPGR
FTNYLDVAEACPTFLMFENVPYVSTRTDGQRLLAKFDVSL
AAKHMSNTYLAGLAQYYTQYTGTINLHFMFTGPTDAKARY
MVAYVPPGMDAPDNPEEAAHCIHAEWDTGLNSKFTFSIPY
ISAADYTYTASHEAETTCVQGWVCVYQITHGKADADALVV
SASAGKDFELRLPVDARQQ
4:  DIVLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWY
QQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTID
PVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVS
IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEA
THKTSTSPIVKSFNRNEX
5:  TTAYTASARGDLAHLTTTAARTLP
A:  EVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQT
PEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLY
LQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSA
AKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETV
TCNVAHPASSTKVDKKIVPR
Description


Functional site

1) chain 4
residue 196-202
type prosite
sequence YTCEATH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCEATH
source prosite : PS00290

2) chain 3
residue 220
type SITE
sequence Q
description Cleavage; by picornain 3C => ECO:0000255
source Swiss-Prot : SWS_FT_FI1


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