eF-site ID 1pda-A
PDB Code 1pda
Chain A

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Title STRUCTURE OF PORPHOBILINOGEN DEAMINASE REVEALS A FLEXIBLE MULTIDOMAIN POLYMERASE WITH A SINGLE CATALYTIC SITE
Classification TRANSFERASE
Compound PORPHOBILINOGEN DEAMINASE
Source (HEM3_ECOLI)
Sequence A:  DNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMV
TRGDVIGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQ
GLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLR
RQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAV
AGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSR
TRELLAALNHHETALRVTAERAMNTRLEGACQVPIGSYAE
LIDGEIWLRGLVGAPDGSQIIRGERRGAPQDAEQMGISLA
EELLNNGAREILAEVY
Description (1)  PORPHOBILINOGEN DEAMINASE (E.C.2.5.1.61)


Functional site

1) chain A
residue 242
type
sequence C
description
source : DPM

2) chain A
residue 11
type
sequence R
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

3) chain A
residue 13
type
sequence S
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

4) chain A
residue 62
type
sequence F
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

5) chain A
residue 83
type
sequence K
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

6) chain A
residue 84
type
sequence D
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

7) chain A
residue 127
type
sequence T
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

8) chain A
residue 128
type
sequence S
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

9) chain A
residue 129
type
sequence S
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

10) chain A
residue 131
type
sequence R
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

11) chain A
residue 132
type
sequence R
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

12) chain A
residue 149
type
sequence R
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

13) chain A
residue 150
type
sequence G
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

14) chain A
residue 151
type
sequence N
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

15) chain A
residue 152
type
sequence V
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

16) chain A
residue 155
type
sequence R
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

17) chain A
residue 242
type
sequence C
description BINDING SITE FOR RESIDUE DPM A 314
source : AC1

18) chain A
residue 83
type
sequence K
description BINDING SITE FOR RESIDUE ACY A 315
source : AC2

19) chain A
residue 132
type
sequence R
description BINDING SITE FOR RESIDUE ACY A 315
source : AC2

20) chain A
residue 169
type
sequence L
description BINDING SITE FOR RESIDUE ACY A 315
source : AC2

21) chain A
residue 170
type
sequence A
description BINDING SITE FOR RESIDUE ACY A 315
source : AC2

22) chain A
residue 83
type catalytic
sequence K
description 260
source MCSA : MCSA1

23) chain A
residue 84
type catalytic
sequence D
description 260
source MCSA : MCSA1

24) chain A
residue 131
type catalytic
sequence R
description 260
source MCSA : MCSA1

25) chain A
residue 132
type catalytic
sequence R
description 260
source MCSA : MCSA1

26) chain A
residue 149
type catalytic
sequence R
description 260
source MCSA : MCSA1

27) chain A
residue 155
type catalytic
sequence R
description 260
source MCSA : MCSA1

28) chain A
residue 242
type catalytic
sequence C
description 260
source MCSA : MCSA1

29) chain A
residue 231-247
type prosite
sequence ERAMNTRLEGACQVPIG
description PORPHOBILINOGEN_DEAM Porphobilinogen deaminase cofactor-binding site. ERaMntrLeGACqVPIG
source prosite : PS00533

30) chain A
residue 242
type MOD_RES
sequence C
description S-(dipyrrolylmethanemethyl)cysteine
source Swiss-Prot : SWS_FT_FI1


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