|
|
eF-site ID
|
1pd1-AB |
|
PDB Code
|
1pd1 |
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Chain
|
A, B |
|
click to enlarge
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Title
|
Crystal structure of the COPII coat subunit, Sec24, complexed with a peptide containing the DxE cargo sorting signal of yeast Sys1 protein |
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Classification
|
TRANSPORT PROTEIN |
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Compound
|
Protein transport protein Sec24 |
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Source
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ORGANISM_COMMON: baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
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Sequence
|
A: |
RPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPS
ELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQH
LYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWR
CNFCRLANDVPMQMDQPKSRYDRNEIKCAVMEYMAPKEYT
LRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIP
NHDERTRISILCVDNAIHYFKIPLDSENINMMDIADLEEP
NSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALK
SAYHLIGGVGGKIIVVSGTLPNLGIGKLQRDSFYKNFTID
CSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGF
SGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMS
RFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMADYC
YVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQL
AIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKE
IVAGGAPLRLCANLRMFPLLMHSLTKHMAFRSGIVPSDHR
ASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVGTI
VLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALV
FDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRN
HDDVITYQSLYIVRGAAREVATLRLWASSTLVEDKILNNE
SYREFLQIMKARISK
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| B: |
QLKDLESQI
|
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Description
|
|
Functional site
|
|
|
1)
|
chain |
A |
| residue |
231 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE ZN A 950
|
| source |
: AC1
|
|
|
2)
|
chain |
A |
| residue |
234 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE ZN A 950
|
| source |
: AC1
|
|
|
3)
|
chain |
A |
| residue |
253 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE ZN A 950
|
| source |
: AC1
|
|
|
4)
|
chain |
A |
| residue |
256 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE ZN A 950
|
| source |
: AC1
|
|
|
5)
|
chain |
A |
| residue |
231 |
| type |
BINDING |
| sequence |
C
|
| description |
BINDING => ECO:0000269|PubMed:12239560, ECO:0000269|PubMed:12941276
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
6)
|
chain |
A |
| residue |
234 |
| type |
BINDING |
| sequence |
C
|
| description |
BINDING => ECO:0000269|PubMed:12239560, ECO:0000269|PubMed:12941276
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
7)
|
chain |
A |
| residue |
253 |
| type |
BINDING |
| sequence |
C
|
| description |
BINDING => ECO:0000269|PubMed:12239560, ECO:0000269|PubMed:12941276
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
8)
|
chain |
A |
| residue |
256 |
| type |
BINDING |
| sequence |
C
|
| description |
BINDING => ECO:0000269|PubMed:12239560, ECO:0000269|PubMed:12941276
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
9)
|
chain |
A |
| residue |
178 |
| type |
MOD_RES |
| sequence |
S
|
| description |
Phosphoserine => ECO:0007744|PubMed:17330950
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
|